Factsheet for Solyc10g045400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g054200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	Solyc05g054200.2.1	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95607	Soybean	plastid	78.22	58.52
KRH67282	Soybean	nucleus	78.47	58.38
HORVU1Hr1G034070.1	Barley	nucleus, plastid	57.18	56.07
VIT_07s0141g00140.t01	Wine grape	plastid	73.51	54.9
AT3G54610.1	Thale cress	plastid	73.76	52.46
GSMUA_Achr8P04400_001	Banana	plastid	67.82	51.12
CDY64337	Canola	plastid	67.33	49.63
Bra014803.1-P	Field mustard	plastid	67.33	49.63
CDY55833	Canola	plastid	67.33	49.45
CDX76140	Canola	plastid	63.12	48.57
Bra014800.1-P	Field mustard	plastid	62.87	48.38
CDY13219	Canola	nucleus, plastid	62.62	48.37
Os10t0415900-01	Rice	nucleus, plastid	59.16	46.77
TraesCSU01G003200.1	Wheat	plastid	58.42	46.55
TraesCS1A01G138200.2	Wheat	plastid	58.42	46.55
OQU91781	Sorghum	plastid	59.16	46.41
TraesCS1D01G134200.1	Wheat	plastid	58.17	46.35
Zm00001d014175_P004	Maize	plastid	58.66	42.55
Bra007082.1-P	Field mustard	nucleus	13.37	20.93
Solyc10g045390.1.1	Tomato	nucleus	0.99	9.76
CDX78250	Canola	cytosol, nucleus, plastid	1.24	7.58
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	1.73	5.93

Protein Annotations

MapMan:15.3.4.1.1	Gene3D:3.40.630.30	InterPro:Acyl_CoA_acyltransferase	InterPro:GCN5	InterPro:GNAT_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004402	GO:GO:0006464	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000182
UniProt:K4CZQ7	PFAM:PF00583	PFscan:PS51186	PANTHER:PTHR22880	PANTHER:PTHR22880:SF124	SUPFAM:SSF55729
EnsemblPlantsGene:Solyc10g045400.1	EnsemblPlants:Solyc10g045400.1.1	UniParc:UPI000276B3FC	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:33262160..33279701

Molecular Weight (calculated)

44676.2 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.558

Length

404 amino acids

Sequence
(BLAST)

001: MDASHLTAPG RSRSSQSPSP SHSASASATS SIHKRKMASD DHAPPFPSSF SDTRDGALTS NDDLESISAR GGGADSDSED DSEEVGDDDE EDYDASSIRN
101: FTASRLETSV AMVPSGRNTK IKSDNSVKIE SSEIAKEVGT GCSGNVAPPT ATGSVSGAVV KDESMKNIFT ENLQTSGAYT AREESLKREE ESGRLKFVCV
201: SNDGVDEHMI WLVGLKNIFA RQLPNMPKEY IVRLVMDRNH KSVMVIRRNL VVGGITYRPY TSQKFGEIAF CAITADEQVK GYGTRLMNHL KQHARDVDGL
301: THFLTYADNN AVGYFVKQGF TKEIYLEKER WQGYIKDYDG GILMECKIDP KLPYTDLSTM IRRQRQAIDE KIRELSNCHI VYPGIDFQKV CTFISEQSSI
401: LDID

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.