Factsheet for Solyc05g054200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g045390.1.1
Solyc10g045400.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	Solyc10g045390.1.1	AT3G54610.1	16603259
AT4G16420.1	Solyc10g045400.1.1	AT3G54610.1	16603259
AT4G16420.1	Solyc10g045390.1.1	AT3G54610.1	21798944
AT4G16420.1	Solyc10g045400.1.1	AT3G54610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021785	Potato	nucleus	95.21	95.21
VIT_00s0194g00130.t01	Wine grape	nucleus	68.14	66.07
AT4G16420.1	Thale cress	nucleus	56.17	62.63
Bra012721.1-P	Field mustard	nucleus	53.96	62.47
CDX90526	Canola	nucleus	53.96	62.47
CDY09696	Canola	nucleus	53.78	62.26
CDY42533	Canola	nucleus, plastid	55.62	62.14
KRH11557	Soybean	nucleus	63.35	62.09
CDY34465	Canola	nucleus	17.31	61.84
CDY69435	Canola	nucleus	55.25	61.73
Bra040578.1-P	Field mustard	nucleus	55.25	61.73
KRH36579	Soybean	nucleus	62.43	61.19
Solyc07g047610.2.1	Tomato	nucleus	55.8	54.11
Os03t0750800-01	Rice	nucleus	55.8	53.44
EER90868	Sorghum	nucleus	54.88	52.74
Zm00001d013265_P003	Maize	nucleus	54.88	52.74
Zm00001d034033_P002	Maize	nucleus	54.51	52.39
HORVU5Hr1G095400.7	Barley	nucleus	54.7	52.29
TraesCS5D01G400100.2	Wheat	nucleus	54.51	52.11
TraesCS5A01G390300.2	Wheat	nucleus	54.33	51.94
GSMUA_Achr6P00130_001	Banana	nucleus	54.88	51.92
TraesCS5B01G395200.1	Wheat	nucleus	50.83	51.11

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	InterPro:ADA2_plants
InterPro:Ada2/TADA2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0003713	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009631	GO:GO:0009719
GO:GO:0009733	GO:GO:0009735	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740
GO:GO:0019538	GO:GO:0035065	GO:GO:0035066	GO:GO:0042127	GO:GO:0046872	GO:GO:1903508
InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	UniProt:K4C299	PFAM:PF00249
PFAM:PF00569	PIRSF:PIRSF025024	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293
PANTHER:PTHR12374	PANTHER:PTHR12374:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	EnsemblPlantsGene:Solyc05g054200.2	EnsemblPlants:Solyc05g054200.2.1	UniParc:UPI0001B32FFC
InterPro:Znf_ZZ	SEG:seg	:	:	:	:

Description

Transcriptional adapter ADA2b [Source:Projected from Arabidopsis thaliana (AT4G16420) UniProtKB/Swiss-Prot;Acc:Q9ATB4]

Coordinates

chr5:+:64153972..64161541

Molecular Weight (calculated)

61458.2 Da

IEP (calculated)

7.846

GRAVY (calculated)

-0.708

Length

543 amino acids

Sequence
(BLAST)

001: MGRSRGNFQA DEDPSQRSRR KKNASSVDNL ESATTGQGTA DGKRALYHCN YCNKDISGRT RIKCAVCYDF DLCIECFSVG AEVHPHKSHH HYRVMDILAF
101: PLICPDWNAD EEMLLLEGIE MYGMGNWAEV GEHVGTKTKE ACIDHFKDAY LKSPYFPLPD MTHVMGKNRM ELLAMAKGNF TDKKGLSSLG DVAPKDESFS
201: PSRIKVEDTH KIGPSGRLTS VSNAGITGIK KPSSKTLIKD QNEPVKFEDN SGRNFGGKKP KSLKDDGSSL MKLSGYIPKR QEFDPEYDND AEQLLADMEF
301: KETETEEERE LKLRVLRIYS KRLDERKRRK VFILERNLLQ PSEFEKNLSP EEKGICRCYD AIMRFLSKEE HEELLKAVVS EHRYLKRIQE LKEAKAAGCR
401: SSAEVDRYLE RKRKKEVEEG VPRKGSSQIG PMSQESLNIP ASSESLGIHS NRKPCSQAIL SSDTNAGVPA FSAGELLSEP EKQLCQEIRL SPHHYLRMQE
501: VLTIQIYSGN ITRKSDAYPL FQIEATKVDR VYDMLLKKGV APL

Best Arabidopsis Sequence Match ( AT4G16420.1 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.