CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87753
EER99211
EER99212
EER99213
EER99214
EES02136
EES11288
EES14131
OQU85641
OQU89795
OQU91781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	OQU91781	AT3G54610.1	16603259
AT4G16420.1	OQU91781	AT3G54610.1	21798944
AT4G16420.1	EER87753	AT4G25490.1	16603259
AT4G16420.1	EER99211	AT4G25490.1	16603259
AT4G16420.1	EER99212	AT4G25490.1	16603259
AT4G16420.1	EER99213	AT4G25490.1	16603259
AT4G16420.1	EER99214	AT4G25490.1	16603259
AT4G16420.1	EES02136	AT4G25490.1	16603259
AT4G16420.1	EES11288	AT4G25490.1	16603259
AT4G16420.1	EES14131	AT4G25490.1	16603259
AT4G16420.1	OQU85641	AT4G25490.1	16603259
AT4G16420.1	OQU89795	AT4G25490.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034033_P002	Maize	nucleus	96.28	96.28
Zm00001d013265_P003	Maize	nucleus	95.75	95.75
Os03t0750800-01	Rice	nucleus	89.91	89.59
TraesCS5A01G390300.2	Wheat	nucleus	89.2	88.73
TraesCS5B01G395200.1	Wheat	nucleus	84.78	88.7
TraesCS5D01G400100.2	Wheat	nucleus	89.03	88.56
HORVU5Hr1G095400.7	Barley	nucleus	88.32	87.85
GSMUA_Achr6P00130_001	Banana	nucleus	72.92	71.78
VIT_00s0194g00130.t01	Wine grape	nucleus	61.42	61.96
KRH36579	Soybean	nucleus	58.23	59.39
CDY34465	Canola	nucleus	15.93	59.21
KRH11557	Soybean	nucleus	57.17	58.3
VIT_12s0057g00920.t01	Wine grape	nucleus	58.05	57.44
CDX90526	Canola	nucleus	47.61	57.36
AT4G16420.1	Thale cress	nucleus	49.38	57.29
CDY09696	Canola	nucleus	47.43	57.14
Bra012721.1-P	Field mustard	nucleus	47.43	57.14
CDY42533	Canola	nucleus, plastid	49.03	57.0
Bra040578.1-P	Field mustard	nucleus	48.85	56.79
CDY69435	Canola	nucleus	48.67	56.58
Solyc07g047610.2.1	Tomato	nucleus	55.93	56.43
PGSC0003DMT400021785	Potato	nucleus	52.92	55.06
Solyc05g054200.2.1	Tomato	nucleus	52.74	54.88
KRG90028	Soybean	nucleus	25.31	54.58
KRH17664	Soybean	nucleus	53.63	52.97
KRG90027	Soybean	nucleus	7.61	51.19
CDY28021	Canola	nucleus	47.08	48.54
CDY35959	Canola	nucleus	47.26	48.28
Bra029673.1-P	Field mustard	nucleus	46.55	47.91
AT3G07740.4	Thale cress	nucleus	46.9	47.75

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	EntrezGene:8085931
InterPro:ADA2_plants	InterPro:Ada2/TADA2	UniProt:C5X0B4	ncoils:Coil	EnsemblPlants:EER90868	ProteinID:EER90868
ProteinID:EER90868.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700
GO:GO:0003713	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538
GO:GO:0035065	GO:GO:0035066	GO:GO:0046872	GO:GO:1903508	InterPro:Homeobox-like_sf	InterPro:IPR000433
InterPro:IPR007526	InterPro:IPR017884	ProteinID:OQU90982.1	PFAM:PF00249	PFAM:PF00569	PIRSF:PIRSF025024
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	EnsemblPlantsGene:SORBI_3001G088100	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	unigene:Sbi.8578	UniParc:UPI0001A82347	RefSeq:XP_002463870.1	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:6849743..6857801

Molecular Weight (calculated)

63271.2 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.706

Length

565 amino acids

Sequence
(BLAST)

001: MGRSRGVPNS GDDDTGHRSK RRRVSGSGGD ATDSISAAIG GAGEGGGKKA LYHCNYCNKD ISGKIRIKCS KCPDFDLCVE CFSVGAEVTP HRSNHPYRVM
101: DNLSFPLICP DWNADEEILL LEGIEMYGLG NWLEVAEHVG TKSKLQCIDH YTTAYMNSPC YPLPDMSHVN GKNRKELLAM AKVQGESKKG TSLLSGELTP
201: KAESPFSPSR VKVEDALGEG PAGRSPSHIA VGANKKASNV GQIKDGANVS KIEDGHVDRS VGVKKPRYSA DEGPSLTELS GYNAKRHEFD PEYDNDAEQA
301: LAEMEFKETD SETDRELKLR VLRIYLSRLE ERKRRKEFIL ERNLLFPNPL EKDLTNEDRE VYHRYKVFMR FLSKEEHEAL IRSVIEERKI RRRIQELQEC
401: RSAGCRTLAE AKIHIEQKRK KEYELNAQKA KESSLIANNK SVQKMNRSMK IESDGNLDPK KGGAGLDSPK TTGLTSVKQW DDWDIVGLPG AELLSASEKL
501: LCCQNRLLPS HYLRMQEVLM QEIFKGSVLK KEDAHVLFKV DPTKVDSVYD MVTKKLGNHE EAPTV

Best Arabidopsis Sequence Match ( AT4G16420.1 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.