Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | OQU91781 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | EER90868 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002618_P001 | Maize | nucleus | 86.34 | 88.29 |
| Os04t0572400-00 | Rice | nucleus | 75.77 | 78.54 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 67.84 | 70.97 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 67.84 | 70.64 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 62.56 | 66.67 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 47.58 | 52.43 |
| AT1G63030.2 | Thale cress | nucleus | 37.89 | 47.51 |
| PGSC0003DMT400037122 | Potato | nucleus | 44.05 | 46.08 |
| KRG91437 | Soybean | nucleus | 41.85 | 45.89 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 44.05 | 45.87 |
| Solyc03g026270.1.1 | Tomato | nucleus | 41.41 | 45.85 |
| CDY16016 | Canola | nucleus | 40.53 | 45.77 |
| CDY49205 | Canola | nucleus | 37.0 | 45.41 |
| Bra027612.1-P | Field mustard | nucleus | 37.0 | 45.41 |
| AT4G25480.1 | Thale cress | nucleus | 43.17 | 45.37 |
| KRH35383 | Soybean | nucleus | 40.97 | 45.37 |
| AT4G25490.1 | Thale cress | nucleus | 42.29 | 45.07 |
| CDY71145 | Canola | nucleus | 40.09 | 45.05 |
| Bra016763.1-P | Field mustard | nucleus | 40.09 | 45.05 |
| Bra019777.1-P | Field mustard | nucleus | 40.53 | 44.66 |
| CDY26574 | Canola | nucleus | 40.09 | 44.39 |
| Bra026963.1-P | Field mustard | nucleus | 40.09 | 44.39 |
| CDY52356 | Canola | nucleus | 42.29 | 44.24 |
| CDY00510 | Canola | nucleus | 42.73 | 44.09 |
| Bra028290.1-P | Field mustard | nucleus | 42.73 | 44.09 |
| AT4G25470.1 | Thale cress | nucleus | 41.85 | 43.98 |
| CDY57075 | Canola | nucleus | 40.09 | 43.96 |
| Bra019162.1-P | Field mustard | nucleus | 41.41 | 43.93 |
| CDY70584 | Canola | nucleus | 41.41 | 43.93 |
| EER87753 | Sorghum | nucleus | 48.02 | 43.78 |
| CDX92710 | Canola | nucleus | 41.41 | 43.72 |
| CDY31270 | Canola | nucleus | 38.77 | 43.56 |
| OQU85641 | Sorghum | nucleus | 63.88 | 43.54 |
| AT1G12610.1 | Thale cress | nucleus | 40.09 | 43.54 |
| CDY65499 | Canola | nucleus | 41.41 | 43.52 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 23.35 | 43.44 |
| CDY31925 | Canola | nucleus | 41.85 | 43.18 |
| PGSC0003DMT400010876 | Potato | nucleus | 39.21 | 43.0 |
| CDX84868 | Canola | nucleus | 40.53 | 42.99 |
| Bra022770.1-P | Field mustard | nucleus | 40.53 | 42.99 |
| CDY52360 | Canola | nucleus | 41.85 | 42.99 |
| AT5G51990.1 | Thale cress | nucleus | 42.29 | 42.86 |
| CDY66018 | Canola | nucleus | 40.09 | 42.52 |
| Solyc03g124110.1.1 | Tomato | nucleus | 40.53 | 41.82 |
| Solyc12g056430.1.1 | Tomato | nucleus | 37.0 | 41.38 |
| Solyc03g026280.2.1 | Tomato | nucleus | 37.89 | 40.95 |
| Solyc08g007830.1.1 | Tomato | nucleus | 40.97 | 40.61 |
| KRH77483 | Soybean | nucleus | 40.09 | 40.27 |
| PGSC0003DMT400037120 | Potato | nucleus | 41.85 | 40.25 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 22.91 | 40.0 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 41.41 | 40.0 |
| KRH09144 | Soybean | nucleus | 40.53 | 39.83 |
| PGSC0003DMT400032622 | Potato | nucleus | 41.41 | 39.5 |
| PGSC0003DMT400032621 | Potato | nucleus | 42.29 | 39.34 |
| Solyc08g007820.1.1 | Tomato | nucleus | 41.85 | 38.93 |
| EES02136 | Sorghum | nucleus | 41.41 | 38.84 |
| CDY66013 | Canola | nucleus | 32.6 | 38.74 |
| CDY52358 | Canola | nucleus | 32.16 | 38.62 |
| PGSC0003DMT400032623 | Potato | nucleus | 41.85 | 38.15 |
| EES14131 | Sorghum | nucleus, plastid | 39.21 | 37.08 |
| EER99212 | Sorghum | nucleus, plastid | 39.21 | 37.08 |
| EER99213 | Sorghum | nucleus | 38.33 | 37.02 |
| PGSC0003DMT400037121 | Potato | nucleus | 41.41 | 36.43 |
| Bra010461.1-P | Field mustard | nucleus | 40.97 | 36.05 |
| KRH57258 | Soybean | nucleus | 39.65 | 35.43 |
| KRH03987 | Soybean | nucleus | 39.65 | 35.29 |
| EER99214 | Sorghum | plastid | 37.89 | 35.25 |
| Bra010460.1-P | Field mustard | nucleus | 41.85 | 34.55 |
| Bra010463.1-P | Field mustard | nucleus | 33.92 | 34.38 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 47.14 | 33.65 |
| EER99211 | Sorghum | plastid | 39.65 | 32.73 |
| KRH38616 | Soybean | plastid | 41.41 | 28.75 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 42.29 | 28.66 |
| PGSC0003DMT400006896 | Potato | cytosol | 16.74 | 28.36 |
| PGSC0003DMT400090651 | Potato | nucleus | 38.33 | 26.44 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | EntrezGene:8060409 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | UniProt:C5YE48 |
| InterPro:DNA-bd_dom_sf | EnsemblPlants:EES11288 | ProteinID:EES11288 | ProteinID:EES11288.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF21 | SMART:SM00380 | EnsemblPlantsGene:SORBI_3006G184800 | SUPFAM:SSF54171 |
| UniParc:UPI0001A86D51 | RefSeq:XP_002446960.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:53986609..53987800
Molecular Weight (calculated)
24587.7 Da
IEP (calculated)
5.629
GRAVY (calculated)
-0.496
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWAYYGISG YSTTPSPPPV GVGGGVGDED EAYMTVSSAP PKRRAGRTKF KETRHPVYKG VRSRNPGRWV CEVREPHGRQ RIWLGTFETA EMAARAHDVA
101: ALALRGRAAC LNFADSPRRL RVPAQGAGHD EIRRAAVEAA ELFRPPQQQQ HNVGGSEAAA AAVAAPCAQG SGGGGIGGDF AYYPMDDGLE FEMHGYLDMA
201: QGMLVDPPQA TAWIEDEYEC EVSLWSY
101: ALALRGRAAC LNFADSPRRL RVPAQGAGHD EIRRAAVEAA ELFRPPQQQQ HNVGGSEAAA AAVAAPCAQG SGGGGIGGDF AYYPMDDGLE FEMHGYLDMA
201: QGMLVDPPQA TAWIEDEYEC EVSLWSY
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.