CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90868
OQU91781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	OQU91781	AT3G54610.1	16603259
AT4G25490.1	EER90868	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041981_P001	Maize	nucleus	83.47	82.45
Os01t0968800-00	Rice	nucleus	64.88	71.69
GSMUA_Achr6P13340_001	Banana	nucleus	45.87	58.12
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	42.56	53.37
GSMUA_Achr2P20280_001	Banana	nucleus	43.39	52.24
GSMUA_Achr10P...	Banana	nucleus	47.93	51.33
Solyc03g026280.2.1	Tomato	nucleus	40.91	47.14
Solyc03g026270.1.1	Tomato	nucleus	39.67	46.83
PGSC0003DMT400037122	Potato	nucleus	40.91	45.62
PGSC0003DMT400037119	Potato	mitochondrion	22.73	45.08
Bra022770.1-P	Field mustard	nucleus	38.43	43.46
CDX84868	Canola	nucleus	38.43	43.46
Solyc03g124110.1.1	Tomato	nucleus	39.26	43.18
CDY66018	Canola	nucleus	38.02	42.99
Bra027612.1-P	Field mustard	nucleus	32.64	42.7
CDY49205	Canola	nucleus	32.64	42.7
AT1G63030.2	Thale cress	nucleus	31.82	42.54
Bra019162.1-P	Field mustard	nucleus	37.6	42.52
CDY70584	Canola	nucleus	37.6	42.52
KRG91437	Soybean	nucleus	36.36	42.51
CDY52356	Canola	nucleus	38.02	42.4
CDX92710	Canola	nucleus	37.6	42.33
PGSC0003DMT400037118	Potato	mitochondrion	22.73	42.31
AT4G25490.1	Thale cress	nucleus	37.19	42.25
VIT_16s0100g00380.t01	Wine grape	nucleus	38.02	42.2
Bra016763.1-P	Field mustard	nucleus	35.12	42.08
CDY71145	Canola	nucleus	35.12	42.08
KRH35383	Soybean	nucleus	35.54	41.95
CDY00510	Canola	nucleus	38.02	41.82
Bra028290.1-P	Field mustard	nucleus	38.02	41.82
Bra019777.1-P	Field mustard	nucleus	35.54	41.75
CDY57075	Canola	nucleus	35.54	41.55
EES11288	Sorghum	nucleus	38.84	41.41
CDY16016	Canola	nucleus	34.3	41.29
VIT_02s0025g04460.t01	Wine grape	nucleus	40.08	41.28
AT4G25470.1	Thale cress	nucleus	36.78	41.2
CDY52360	Canola	nucleus	37.6	41.18
CDY31270	Canola	nucleus	34.3	41.09
AT5G51990.1	Thale cress	nucleus	38.02	41.07
PGSC0003DMT400037120	Potato	nucleus	39.67	40.68
Bra026963.1-P	Field mustard	nucleus	34.3	40.49
CDY26574	Canola	nucleus	34.3	40.49
CDY31925	Canola	nucleus	36.78	40.45
CDY65499	Canola	nucleus	35.95	40.28
PGSC0003DMT400037121	Potato	nucleus	42.56	39.92
KRH09144	Soybean	nucleus	38.02	39.83
AT4G25480.1	Thale cress	nucleus	35.54	39.81
PGSC0003DMT400032622	Potato	nucleus	38.02	38.66
PGSC0003DMT400010876	Potato	nucleus	33.06	38.65
Solyc12g056430.1.1	Tomato	nucleus	32.23	38.42
AT1G12610.1	Thale cress	nucleus	33.06	38.28
Solyc08g007820.1.1	Tomato	nucleus	38.02	37.7
PGSC0003DMT400006896	Potato	cytosol	20.66	37.31
PGSC0003DMT400032621	Potato	nucleus	37.6	37.3
Solyc08g007830.1.1	Tomato	nucleus	35.12	37.12
KRH77483	Soybean	nucleus	34.3	36.73
EER99212	Sorghum	nucleus, plastid	36.36	36.67
EER99213	Sorghum	nucleus	35.12	36.17
KRH57258	Soybean	nucleus	37.6	35.83
CDY66013	Canola	nucleus	28.1	35.6
CDY52358	Canola	nucleus	27.69	35.45
EER87753	Sorghum	nucleus	36.36	35.34
KRH03987	Soybean	nucleus	36.78	34.9
Bra010461.1-P	Field mustard	nucleus	37.19	34.88
EER99214	Sorghum	plastid	34.3	34.02
PGSC0003DMT400032623	Potato	nucleus	34.71	33.73
Bra010460.1-P	Field mustard	nucleus	37.6	33.09
EES14131	Sorghum	nucleus, plastid	32.23	32.5
EER99211	Sorghum	plastid	36.36	32.0
Bra010463.1-P	Field mustard	nucleus	28.93	31.25
OQU85641	Sorghum	nucleus	38.43	27.93
KRH38616	Soybean	plastid	37.6	27.83
PGSC0003DMT400090651	Potato	nucleus	36.78	27.05
OQU89795	Sorghum	mitochondrion, nucleus	35.54	25.67

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:8078047	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XJC4
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES02136	ProteinID:EES02136	ProteinID:EES02136.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	EnsemblPlantsGene:SORBI_3003G442100	SUPFAM:SSF54171
UniParc:UPI0001A84CB3	RefSeq:XP_002457016.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:74068295..74069023

Molecular Weight (calculated)

25811.0 Da

IEP (calculated)

7.133

GRAVY (calculated)

-0.495

Length

242 amino acids

Sequence
(BLAST)

001: MDADDSSSAS SSSPPVSPAD HHHHHSLPPK RRAGRKKFRE TRHPVYRGVR ARGGGTRWVC EVREPQAQAR IWLGTYPTPE MAARAHDVAA IALRGATAAD
101: LNFPDSAHAL PRARTAAPED IRCAAAQAAE LYRPSSSSSS YSASSGLLQQ HARRTITPPP PEVSSACCWT TSTGTRSAGG GGDSSTAASC YGFLDEDAIF
201: DMPGLIDDMA RGMLLTPPAM GRGALLDDDH HSHVDCTLWM VD

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.