Factsheet for GSMUA_Achr10P15510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P00130_001
GSMUA_Achr8P04400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	GSMUA_Achr8P04400_001	AT3G54610.1	16603259
AT4G25490.1	GSMUA_Achr6P00130_001	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13340_001	Banana	nucleus	67.26	79.58
GSMUA_Achr2P20280_001	Banana	nucleus	61.95	69.65
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	58.85	68.91
Os01t0968800-00	Rice	nucleus	53.98	55.71
Solyc03g026270.1.1	Tomato	nucleus	46.9	51.71
GSMUA_Achr3P18160_001	Banana	nucleus	15.49	51.47
PGSC0003DMT400037122	Potato	nucleus	48.67	50.69
Solyc03g026280.2.1	Tomato	nucleus	46.46	50.0
PGSC0003DMT400037119	Potato	mitochondrion	26.55	49.18
Solyc03g124110.1.1	Tomato	nucleus	47.79	49.09
Zm00001d041981_P001	Maize	nucleus	53.1	48.98
EES02136	Sorghum	nucleus	51.33	47.93
GSMUA_Achr11P...	Banana	nucleus	43.81	47.6
CDX92710	Canola	nucleus	45.13	47.44
GSMUA_Achr8P11980_001	Banana	nucleus	44.25	47.39
Bra022770.1-P	Field mustard	nucleus	44.69	47.2
CDX84868	Canola	nucleus	44.69	47.2
GSMUA_Achr7P05900_001	Banana	nucleus	42.92	47.09
AT4G25490.1	Thale cress	nucleus	44.25	46.95
Bra019162.1-P	Field mustard	nucleus	43.81	46.26
CDY70584	Canola	nucleus	43.81	46.26
CDY66018	Canola	nucleus	43.81	46.26
Bra028290.1-P	Field mustard	nucleus	44.69	45.91
CDY00510	Canola	nucleus	44.69	45.91
AT4G25470.1	Thale cress	nucleus	43.81	45.83
VIT_16s0100g00380.t01	Wine grape	nucleus	43.81	45.41
KRG91437	Soybean	nucleus	41.59	45.41
CDY49205	Canola	nucleus	37.17	45.41
Bra027612.1-P	Field mustard	nucleus	37.17	45.41
AT4G25480.1	Thale cress	nucleus	43.36	45.37
CDY52356	Canola	nucleus	43.36	45.16
PGSC0003DMT400037120	Potato	nucleus	46.46	44.49
CDY31925	Canola	nucleus	42.92	44.09
AT1G63030.2	Thale cress	nucleus	34.96	43.65
PGSC0003DMT400037118	Potato	mitochondrion	24.78	43.08
CDY65499	Canola	nucleus	41.15	43.06
CDY52360	Canola	nucleus	42.04	42.99
KRH35383	Soybean	nucleus	38.94	42.93
PGSC0003DMT400037121	Potato	nucleus	48.67	42.64
KRH09144	Soybean	nucleus	43.36	42.42
AT5G51990.1	Thale cress	nucleus	42.04	42.41
CDY16016	Canola	nucleus	37.61	42.29
VIT_02s0025g04460.t01	Wine grape	nucleus	43.81	42.13
Bra016763.1-P	Field mustard	nucleus	37.61	42.08
CDY71145	Canola	nucleus	37.61	42.08
CDY57075	Canola	nucleus	38.5	42.03
Bra019777.1-P	Field mustard	nucleus	38.05	41.75
CDY26574	Canola	nucleus	37.61	41.46
Bra026963.1-P	Field mustard	nucleus	37.61	41.46
CDY31270	Canola	nucleus	36.73	41.09
CDY66013	Canola	nucleus	34.07	40.31
CDY52358	Canola	nucleus	33.19	39.68
KRH77483	Soybean	nucleus	39.38	39.38
PGSC0003DMT400010876	Potato	nucleus	35.4	38.65
Bra010461.1-P	Field mustard	nucleus	43.36	37.98
Solyc12g056430.1.1	Tomato	nucleus	34.07	37.93
KRH57258	Soybean	nucleus	42.48	37.8
AT1G12610.1	Thale cress	nucleus	34.51	37.32
Solyc08g007820.1.1	Tomato	nucleus	39.82	36.89
KRH03987	Soybean	nucleus	41.59	36.86
PGSC0003DMT400032622	Potato	nucleus	38.5	36.55
PGSC0003DMT400032621	Potato	nucleus	38.94	36.07
PGSC0003DMT400006896	Potato	cytosol	21.24	35.82
Solyc08g007830.1.1	Tomato	nucleus	35.4	34.93
Bra010463.1-P	Field mustard	nucleus	34.51	34.82
Bra010460.1-P	Field mustard	nucleus	42.04	34.55
PGSC0003DMT400032623	Potato	nucleus	36.28	32.93
KRH38616	Soybean	plastid	43.36	29.97
GSMUA_Achr4P19660_001	Banana	mitochondrion, nucleus	40.71	28.93
PGSC0003DMT400090651	Potato	nucleus	41.59	28.57

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G15510_001	EnsemblPlants:GSMUA_Achr10P15510_001	EnsemblPlants:GSMUA_Achr10T15510_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RIH7	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294F5F4	SEG:seg

Description

AP2/ERF domain-containing transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr10G15510_001]

Coordinates

chr10:-:23420312..23421064

Molecular Weight (calculated)

24589.6 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.477

Length

226 amino acids

Sequence
(BLAST)

001: MDFEDSSSTS SASSSSCSSS SSLTSSSNQR FPSGLSTACS APASRATAPS PKRKAGRKKF RETRHPVYHG VRERNGGRWV CEVREPRKKS RIWLGTFRTP
101: EVAARAHDVA AIALRGESAH LNFPDSAWVL PRATSSAAED VRRAAAEAAE MFGASETRSQ QEAVAAPEAA AWMPSALFVD EEALFNMPGL LDDMARGMLL
201: TPLAMQTGFD WDRVDEHHMD LSLWAD

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.