Factsheet for GSMUA_Achr8P11980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P00130_001
GSMUA_Achr8P04400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	GSMUA_Achr8P04400_001	AT3G54610.1	16603259
AT4G25490.1	GSMUA_Achr6P00130_001	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	79.15	80.29
GSMUA_Achr3P18160_001	Banana	nucleus	18.01	55.88
GSMUA_Achr7P05900_001	Banana	nucleus	54.03	55.34
Solyc03g026270.1.1	Tomato	nucleus	51.66	53.17
GSMUA_Achr6P13340_001	Banana	nucleus	46.45	51.31
PGSC0003DMT400037122	Potato	nucleus	52.61	51.15
KRG91437	Soybean	nucleus	48.34	49.28
KRH35383	Soybean	nucleus	47.87	49.27
VIT_16s0100g00380.t01	Wine grape	nucleus	50.71	49.08
Solyc03g026280.2.1	Tomato	nucleus	48.82	49.05
Solyc03g124110.1.1	Tomato	nucleus	50.71	48.64
Bra022770.1-P	Field mustard	nucleus	49.29	48.6
PGSC0003DMT400037119	Potato	mitochondrion	27.96	48.36
AT4G25480.1	Thale cress	nucleus	49.29	48.15
CDX84868	Canola	nucleus	48.82	48.13
CDY66018	Canola	nucleus	48.82	48.13
CDX92710	Canola	nucleus	48.82	47.91
AT4G25490.1	Thale cress	nucleus	48.34	47.89
Bra028290.1-P	Field mustard	nucleus	49.76	47.73
CDY00510	Canola	nucleus	49.76	47.73
Bra019162.1-P	Field mustard	nucleus	48.34	47.66
CDY70584	Canola	nucleus	48.34	47.66
AT1G63030.2	Thale cress	nucleus	40.76	47.51
CDY49205	Canola	nucleus	41.23	47.03
Bra027612.1-P	Field mustard	nucleus	41.23	47.03
CDY57075	Canola	nucleus	45.5	46.38
CDY31925	Canola	nucleus	48.34	46.36
AT4G25470.1	Thale cress	nucleus	47.39	46.3
AT5G51990.1	Thale cress	nucleus	48.82	45.98
CDY16016	Canola	nucleus	43.6	45.77
CDY52356	Canola	nucleus	46.92	45.62
Bra016763.1-P	Field mustard	nucleus	43.6	45.54
CDY71145	Canola	nucleus	43.6	45.54
PGSC0003DMT400010876	Potato	nucleus	44.55	45.41
CDY52360	Canola	nucleus	47.39	45.25
Bra019777.1-P	Field mustard	nucleus	44.08	45.15
VIT_02s0025g04460.t01	Wine grape	nucleus	50.24	45.11
PGSC0003DMT400037120	Potato	nucleus	50.24	44.92
CDY26574	Canola	nucleus	43.6	44.88
Bra026963.1-P	Field mustard	nucleus	43.6	44.88
PGSC0003DMT400037118	Potato	mitochondrion	27.49	44.62
CDY65499	Canola	nucleus	45.5	44.44
Solyc12g056430.1.1	Tomato	nucleus	42.65	44.34
GSMUA_Achr2P20280_001	Banana	nucleus	42.18	44.28
GSMUA_Achr10P...	Banana	nucleus	47.39	44.25
KRH09144	Soybean	nucleus	48.34	44.16
CDY31270	Canola	nucleus	42.18	44.06
AT1G12610.1	Thale cress	nucleus	43.13	43.54
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	39.81	43.52
PGSC0003DMT400037121	Potato	nucleus	53.08	43.41
CDY66013	Canola	nucleus	37.44	41.36
CDY52358	Canola	nucleus	36.97	41.27
KRH77483	Soybean	nucleus	44.08	41.15
PGSC0003DMT400032622	Potato	nucleus	45.02	39.92
PGSC0003DMT400032621	Potato	nucleus	45.5	39.34
Solyc08g007830.1.1	Tomato	nucleus	42.65	39.3
Solyc08g007820.1.1	Tomato	nucleus	45.02	38.93
KRH03987	Soybean	nucleus	46.92	38.82
KRH57258	Soybean	nucleus	45.97	38.19
Bra010461.1-P	Field mustard	nucleus	46.45	37.98
PGSC0003DMT400032623	Potato	nucleus	43.13	36.55
Bra010460.1-P	Field mustard	nucleus	46.92	36.0
Bra010463.1-P	Field mustard	nucleus	37.91	35.71
GSMUA_Achr4P19660_001	Banana	mitochondrion, nucleus	53.55	35.53
PGSC0003DMT400006896	Potato	cytosol	20.85	32.84
KRH38616	Soybean	plastid	48.34	31.19
PGSC0003DMT400090651	Potato	nucleus	45.97	29.48

Protein Annotations

MapMan:15.5.7.2	MapMan:26.4.3.4.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G11980_001	EnsemblPlants:GSMUA_Achr8P11980_001
EnsemblPlants:GSMUA_Achr8T11980_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TPQ1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002961418
SEG:seg	:	:	:	:	:

Description

Dehydration-responsive element-binding protein 1E [Source:GMGC_GENE;Acc:GSMUA_Achr8G11980_001]

Coordinates

chr8:+:8692625..8693522

Molecular Weight (calculated)

23237.2 Da

IEP (calculated)

5.139

GRAVY (calculated)

-0.529

Length

211 amino acids

Sequence
(BLAST)

001: MDSFSSDSLD SPLARRSAGA AASDEEVSYA TVSSAPPKRR AGRTKFRETR HPVYKGVRRR NGDKWVCEVR EPNKKSRIWL GTFHTAEMAA RAHDVAAMAL
101: RGRSACLNFA DSPWRLPVPE SSSPADIRKA AARVAEAFLP RPSSETPEQM QEQMATAWAA ADDAFFVEDG LNFGMQGYLD MAEGLLIDPP PPPMDYEDDS
201: DGIVPLWSYA V

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.