Factsheet for GSMUA_Achr6P00130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P20280_001
GSMUA_Achr4P19660_001
GSMUA_Achr6P13340_001
GSMUA_Achr7P05900_001
GSMUA_Achr8P04400_001
GSMUA_Achr8P11980_001
GSMUA_Achr8P16070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	GSMUA_Achr8P04400_001	AT3G54610.1	16603259
AT4G16420.1	GSMUA_Achr8P04400_001	AT3G54610.1	21798944
AT4G16420.1	GSMUA_Achr10P...	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr11P...	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr2P20280_001	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr4P19660_001	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr6P13340_001	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr7P05900_001	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr8P11980_001	AT4G25490.1	16603259
AT4G16420.1	GSMUA_Achr8P16070_001	AT4G25490.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0750800-01	Rice	nucleus	72.65	73.55
Zm00001d034033_P002	Maize	nucleus	71.95	73.1
EER90868	Sorghum	nucleus	71.78	72.92
HORVU5Hr1G095400.7	Barley	nucleus	72.13	72.89
Zm00001d013265_P003	Maize	nucleus	71.6	72.74
TraesCS5D01G400100.2	Wheat	nucleus	71.78	72.54
TraesCS5A01G390300.2	Wheat	nucleus	71.78	72.54
TraesCS5B01G395200.1	Wheat	nucleus	67.6	71.85
VIT_00s0194g00130.t01	Wine grape	nucleus	59.76	61.25
KRH36579	Soybean	nucleus	57.32	59.39
VIT_12s0057g00920.t01	Wine grape	nucleus	58.88	59.19
CDY34465	Canola	nucleus	15.51	58.55
KRH11557	Soybean	nucleus	56.27	58.3
Solyc07g047610.2.1	Tomato	nucleus	56.27	57.68
CDX90526	Canola	nucleus	45.82	56.08
KRG90027	Soybean	nucleus	8.19	55.95
Bra012721.1-P	Field mustard	nucleus	45.64	55.86
CDY09696	Canola	nucleus	45.47	55.65
AT4G16420.1	Thale cress	nucleus	47.21	55.65
CDY69435	Canola	nucleus	46.86	55.35
CDY42533	Canola	nucleus, plastid	46.86	55.35
Bra040578.1-P	Field mustard	nucleus	46.69	55.14
KRG90028	Soybean	nucleus	25.09	54.96
Solyc05g054200.2.1	Tomato	nucleus	51.92	54.88
PGSC0003DMT400021785	Potato	nucleus	51.74	54.7
KRH17664	Soybean	nucleus	52.61	52.8
CDY35959	Canola	nucleus	47.39	49.19
Bra029673.1-P	Field mustard	nucleus	46.69	48.82
CDY28021	Canola	nucleus	46.52	48.72
AT3G07740.4	Thale cress	nucleus	45.47	47.03

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	InterPro:ADA2_plants
InterPro:Ada2/TADA2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035065	GO:GO:0046872
GO:GO:1903508	EnsemblPlantsGene:GSMUA_Achr6G00130_001	EnsemblPlants:GSMUA_Achr6P00130_001	EnsemblPlants:GSMUA_Achr6T00130_001	InterPro:Homeobox-like_sf	InterPro:IPR000433
InterPro:IPR017884	UniProt:M0T2W1	PFAM:PF00249	PFAM:PF00569	PIRSF:PIRSF025024	ScanProsite:PS01357
PFscan:PS50135	PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00291	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF57850	UniParc:UPI000294FCE3	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

Transcriptional adapter ADA2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00130_001]

Coordinates

chr6:-:91609..103593

Molecular Weight (calculated)

64506.7 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.846

Length

574 amino acids

Sequence
(BLAST)

001: MGRSRAVPNS GDDDTSHRSK RRRVAASGEA LGNIEAGSGT SEGKKALYHC NYCNKDISGK IRIKCTKCAD FDLCVECFSV GAEVTPHKSN HPYRVMDNLS
101: FPLICPDWNA DEEILLLEGI EMYGLGNWTE VAEHVGTKSK AQCIDHYTTS YLNSPCYPLP DMSRVNGKNR KELLAMAKVQ VEGKKGSSLL GDVTPKEESP
201: FSPARVKVED IGEGAANQSP SNLAAGASKV TSNTGKFKDN PDGPKVEDSY LDRTIGVKKP KCSGEEGPSI TESGYNPKRQ EFDPEYDNDA EQALADMEFK
301: ENDTETEREL KLRVLRIYLS RLDERKRRKD FILERNLLYP NPLEKELSSE DRELYNRFKV FMRFLSQEEH ENLVKSVIEE RKIRRRIQEL QECRAAGCRT
401: LAEAKAYTEQ KRKRELEVGA QNSKENTQIL SGGKVAQKAN RPLNREKGDN DGSPRNTTDN HKIKGSTGFE SSGKDSPSTT TGQVSVRSFD EWDITGLPGT
501: EFLSETEQDF CCQNRLLPSH YLKMQETLVQ EIYKGNIINK SDAHGLFKVD PVKVDKVYDI VKRKLGQQEE STIV

Best Arabidopsis Sequence Match ( AT4G16420.3 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKEQNMKEEY PFSPPKVKVE
201: DTQKESFVDR SFGGKKPVST SVNNSLVELS NYNQKREEFD PEYDNDAEQL LAEMEFKEND TPEEHELKLR VLRIYSKRLD ERKRRKEFII ERNLLYPNPF
301: EKDLSQEEKV QCRRLDVFMR FHSKEEHDEL LRNVVSEYRM VKRLKDLKEA QVAGCRSTAE AERYLGRKRK RENEEGMNRG KESGQFGQIA GEMGSRPPVQ
401: ASSSYVNDLD LIGFTESQLL SESEKRLCSE VKLVPPVYLQ MQQVMSHEIF KGNVTKKSDA YSLFKIDPTK VDRVYDMLVK KGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.