CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76140
CDX78249
CDX78250
CDY13219
CDY55833
CDY64337

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	CDX76140	AT3G54610.1	16603259
AT4G16420.1	CDX78249	AT3G54610.1	16603259
AT4G16420.1	CDX78250	AT3G54610.1	16603259
AT4G16420.1	CDY13219	AT3G54610.1	16603259
AT4G16420.1	CDY55833	AT3G54610.1	16603259
AT4G16420.1	CDY64337	AT3G54610.1	16603259
AT4G16420.1	CDX76140	AT3G54610.1	21798944
AT4G16420.1	CDX78249	AT3G54610.1	21798944
AT4G16420.1	CDX78250	AT3G54610.1	21798944
AT4G16420.1	CDY13219	AT3G54610.1	21798944
AT4G16420.1	CDY55833	AT3G54610.1	21798944
AT4G16420.1	CDY64337	AT3G54610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69435	Canola	nucleus	99.38	99.38
CDX90526	Canola	nucleus	88.27	91.47
AT4G16420.1	Thale cress	nucleus	91.36	91.17
CDY09696	Canola	nucleus	87.65	90.83
CDY34465	Canola	nucleus	26.13	83.55
KRH36579	Soybean	nucleus	67.49	59.21
VIT_00s0194g00130.t01	Wine grape	nucleus	67.7	58.75
KRH11557	Soybean	nucleus	66.46	58.3
Solyc05g054200.2.1	Tomato	nucleus	62.14	55.62
PGSC0003DMT400021785	Potato	nucleus	61.73	55.25
Os03t0750800-01	Rice	nucleus	57.61	49.38
Zm00001d034033_P002	Maize	nucleus	57.2	49.2
EER90868	Sorghum	nucleus	57.0	49.03
Zm00001d013265_P003	Maize	nucleus	56.79	48.85
HORVU5Hr1G095400.7	Barley	nucleus	56.38	48.24
TraesCS5A01G390300.2	Wheat	nucleus	56.38	48.24
TraesCS5D01G400100.2	Wheat	nucleus	56.38	48.24
TraesCS5B01G395200.1	Wheat	nucleus	52.26	47.04
GSMUA_Achr6P00130_001	Banana	nucleus	55.35	46.86
CDY35959	Canola	nucleus	49.18	43.22
CDY28021	Canola	nucleus	48.56	43.07

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	GO:A0A078I0G7
UniProt:A0A078I0G7	InterPro:ADA2_plants	InterPro:Ada2/TADA2	EnsemblPlants:CDY42533	ProteinID:CDY42533	ProteinID:CDY42533.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035065	GO:GO:0046872
GO:GO:1903508	EnsemblPlantsGene:GSBRNA2T00074995001	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884
PFAM:PF00249	PFAM:PF00569	PIRSF:PIRSF025024	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291
SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0004EE0817	InterPro:Znf_ZZ

Description

BnaC08g10700DTranscriptional adapter [Source:UniProtKB/TrEMBL;Acc:A0A078I0G7]

Coordinates

chrLK032528:+:18751..21647

Molecular Weight (calculated)

56103.8 Da

IEP (calculated)

6.784

GRAVY (calculated)

-0.838

Length

486 amino acids

Sequence
(BLAST)

001: MGRSRGNFHN FEDPTQRTRK KKNAANVENF ESSSMVTGTE GGGKYNCDYC QKDITGKIRI KCDVCPDFDL CVECMSVGAE ITPHKCDHAY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GMGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNKKEL QAMAKGRIEE KKAEQNMKEE YPFSPPKVKV
201: EDTQKESHTD RSFGGKKPVV APGNNSLVEL SNYNHKREEF DPEYDNDAEQ LLAEMEFKDN DTPEEKDLKL RVLRIYSKRL DERKRRKEFI LDRNLLYPNP
301: FEKELSQEEK MQCRRLDVFM RFHSKEEHEE LLRSVVSEYR MVKRLKDLKE AQMAGCRSTA EAERYLARKR KRENEEGMMN RGKESGQFGA GELGTRPPVQ
401: ASSSYVNDLD LIGFTESQLL SESEKRLCSE AKLVPPVYLH MQQVMSHEIF KGNVTKKSDA YSLFKIDPTK VDRVYDMLVK KGIAQL

Best Arabidopsis Sequence Match ( AT4G16420.1 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.