CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95607
KRH67282

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	KRG95607	AT3G54610.1	16603259
AT4G16420.1	KRH67282	AT3G54610.1	16603259
AT4G16420.1	KRG95607	AT3G54610.1	21798944
AT4G16420.1	KRH67282	AT3G54610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36579	Soybean	nucleus	93.32	93.32
VIT_00s0194g00130.t01	Wine grape	nucleus	74.19	73.39
CDY34465	Canola	nucleus	18.59	67.76
AT4G16420.1	Thale cress	nucleus	58.84	66.94
CDY42533	Canola	nucleus, plastid	58.3	66.46
CDY69435	Canola	nucleus	58.3	66.46
Bra040578.1-P	Field mustard	nucleus	58.12	66.26
CDY09696	Canola	nucleus	55.6	65.67
CDX90526	Canola	nucleus	55.42	65.46
Bra012721.1-P	Field mustard	nucleus	55.23	65.25
Solyc05g054200.2.1	Tomato	nucleus	62.09	63.35
PGSC0003DMT400021785	Potato	nucleus	61.91	63.17
Os03t0750800-01	Rice	nucleus	59.93	58.55
TraesCS5D01G400100.2	Wheat	nucleus	59.21	57.75
TraesCS5A01G390300.2	Wheat	nucleus	59.21	57.75
HORVU5Hr1G095400.7	Barley	nucleus	58.84	57.39
Zm00001d034033_P002	Maize	nucleus	58.3	57.17
EER90868	Sorghum	nucleus	58.3	57.17
Zm00001d013265_P003	Maize	nucleus	58.12	56.99
TraesCS5B01G395200.1	Wheat	nucleus	55.05	56.48
GSMUA_Achr6P00130_001	Banana	nucleus	58.3	56.27
KRG90028	Soybean	nucleus	25.81	54.58
KRG90027	Soybean	nucleus	8.12	53.57
KRH17664	Soybean	nucleus	54.15	52.45

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	EntrezGene:100811887	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90
EMBL:ACUP02009215	InterPro:ADA2_plants	InterPro:Ada2/TADA2	EnsemblPlantsGene:GLYMA_15G117100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0003713	GO:GO:0003824	GO:GO:0004402
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	GO:GO:0035065	GO:GO:0035066	GO:GO:0046872
GO:GO:1903508	InterPro:Homeobox-like_sf	UniProt:I1MFQ5	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884
EnsemblPlants:KRH11557	ProteinID:KRH11557	ProteinID:KRH11557.1	PFAM:PF00249	PFAM:PF00569	PIRSF:PIRSF025024
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF57850
InterPro:SWIRM	UniParc:UPI000233ABCF	InterPro:Znf_ZZ	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:9200056..9206263

Molecular Weight (calculated)

61692.7 Da

IEP (calculated)

7.002

GRAVY (calculated)

-0.818

Length

554 amino acids

Sequence
(BLAST)

001: MGRSRGNFHH ADEDPNQRSR RKKNAASGEN SESGAAGQGA GEGKKALYHC NYCNKDITGK IRIKCAMCPD FDLCIECFSV GAEVTPHKSS HPYRVMDNLS
101: FPLICPDWNA DDEILLLEGI EMYGLGNWTE VAEHVGTKNK ESCIEHYRNV YLNSPFFPVP DMSHVVGKNR KELLAMAKGQ GEDKKGISMG DLSIKAESSF
201: SPSRAKVEDS HKAGSSNRLA SGLNSESDGP LGNTHAANQK ASNVGRGKGG PGIIKMEDSQ LDRDFGGKKP TSSGNEGPSL VESSGYNAKR QEFDPEYDND
301: AEQLLAEMEF KDTDTDDERE LKLRVLRFYA KRLDERKRRK DFILERNLLY PNPFEKDLTP EEKTICRKYD LFMRFHTKEE HEELLRTVIS EHRTRKRLQE
401: LKEARAAGCR NSAEADRYLA QKRRREAEES GCRTKESAQG GPSNQGVPNA LMSPDSAGKD LSGRPAGPAT SSSVNEMDVT GYYGADLLSE PEKRLCCELR
501: LPPAMYLKMQ EQLSLQILAG TVAAKSDAHQ LFKMDAMKID RVYDMLIKKG IGSP

Best Arabidopsis Sequence Match ( AT4G16420.2 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKDRSFG GKKPVSTSVN NSLVELSNYN QKREEFDPEY DNDAEQLLAE MEFKENDTPE EHELKLRVLR IYSKRLDERK RRKEFIIERN LLYPNPFEKD
301: LSQEEKVQCR RLDVFMRFHS KEEHDELLRN VVSEYRMVKR LKDLKEAQVA GCRSTAEAER YLGRKRKREN EEGMNRGKES GQFGQIAGEM GSRPPVQASS
401: SYVNDLDLIG FTESQLLSES EKRLCSEVKL VPPVYLQMQQ VMSHEIFKGN VTKKSDAYSL FKIDPTKVDR VYDMLVKKGI AQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.