CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76140
CDX78249
CDX78250
CDY13219
CDY55833
CDY64337

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	CDX76140	AT3G54610.1	16603259
AT4G16420.1	CDX78249	AT3G54610.1	16603259
AT4G16420.1	CDX78250	AT3G54610.1	16603259
AT4G16420.1	CDY13219	AT3G54610.1	16603259
AT4G16420.1	CDY55833	AT3G54610.1	16603259
AT4G16420.1	CDY64337	AT3G54610.1	16603259
AT4G16420.1	CDX76140	AT3G54610.1	21798944
AT4G16420.1	CDX78249	AT3G54610.1	21798944
AT4G16420.1	CDX78250	AT3G54610.1	21798944
AT4G16420.1	CDY13219	AT3G54610.1	21798944
AT4G16420.1	CDY55833	AT3G54610.1	21798944
AT4G16420.1	CDY64337	AT3G54610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42533	Canola	nucleus, plastid	83.55	26.13
CDY69435	Canola	nucleus	83.55	26.13
CDY09696	Canola	nucleus	80.26	26.01
CDX90526	Canola	nucleus	78.95	25.59
AT4G16420.1	Thale cress	nucleus	78.95	24.64
KRH11557	Soybean	nucleus	67.76	18.59
KRH36579	Soybean	nucleus	67.76	18.59
VIT_00s0194g00130.t01	Wine grape	nucleus	66.45	18.04
Solyc05g054200.2.1	Tomato	nucleus	61.84	17.31
PGSC0003DMT400021785	Potato	nucleus	60.53	16.94
EER90868	Sorghum	nucleus	59.21	15.93
Zm00001d013265_P003	Maize	nucleus	59.21	15.93
Zm00001d034033_P002	Maize	nucleus	58.55	15.75
Os03t0750800-01	Rice	nucleus	57.89	15.52
GSMUA_Achr6P00130_001	Banana	nucleus	58.55	15.51
HORVU5Hr1G095400.7	Barley	nucleus	57.24	15.32
TraesCS5A01G390300.2	Wheat	nucleus	57.24	15.32
TraesCS5D01G400100.2	Wheat	nucleus	57.24	15.32
CDY28021	Canola	nucleus	50.0	13.87
CDY35959	Canola	nucleus	50.0	13.74
TraesCS5B01G395200.1	Wheat	nucleus	44.74	12.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	GO:A0A078H7F8	UniProt:A0A078H7F8
InterPro:ADA2_plants	EnsemblPlants:CDY34465	ProteinID:CDY34465	ProteinID:CDY34465.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003713	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035065
GO:GO:0046872	GO:GO:1903508	EnsemblPlantsGene:GSBRNA2T00056572001	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR017884
PFAM:PF00249	PFAM:PF00569	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS51293	PANTHER:PTHR12374
PANTHER:PTHR12374:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF57850	UniParc:UPI0004EED9ED	InterPro:Znf_ZZ	SEG:seg	:	:

Description

BnaC01g21680DBnaC01g21680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7F8]

Coordinates

chrLK032334:-:332509..334211

Molecular Weight (calculated)

17119.5 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.265

Length

152 amino acids

Sequence
(BLAST)

001: MRSRGNFHNV EDSTQRICVT VENFESSSMV QGTEGGAKYN CNYCQKDITG KIRIKCAVCL NFDLCVECMS AGAEINTHKC DHAYRVMGNL TFPLICPDWS
101: ADDEMLLLEG LEMYGMGNMT EVAEYVGSKS KEQCLEHYRN IYLNSPCFPL PV

Best Arabidopsis Sequence Match ( AT3G07740.1 )
(BLAST)

001: MGRSKLASRP AEEDLNPGKS KRKKISLGPE NAAASISTGI EAGNERKPGL YCCNYCDKDL SGLVRFKCAV CMDFDLCVEC FSVGVELNRH KNSHPYRVMD
101: NLSFSLVTSD WNADEEILLL EAIATYGFGN WKEVADHVGS KTTTECIKHF NSAYMQSPCF PLPDLSHTIG KSKDELLAMS KDSAVKTEIP AFVRLSPKEE
201: LPVSAEIKHE ASGKVNEIDP PLSALAGVKK KGNVPQAKDI IKLEAAKQQS DRSVGEKKLR LPGEKVPLVT ELYGYNLKRE EFEIEHDNDA EQLLADMEFK
301: DSDTDAEREQ KLQVLRIYSK RLDERKRRKE FVLERNLLYP DQYEMSLSAE ERKIYKSCKV FARFQSKEEH KELIKKVIEE HQILRRIEDL QEARTAGCRT
401: TSDANRFIEE KRKKEAEESM LLRLNHGAPG SIAGKTLKSP RGLPRNLHPF GSDSLPKVTP PRIYSGLDTW DVDGLLGADL LSETEKKMCN ETRILPVHYL
501: KMLDILTREI KKGQIKKKSD AYSFFKVEPS KVDRVYDMLV HKGIGDST

Arabidopsis Description

ADA2ATranscriptional adapter [Source:UniProtKB/TrEMBL;Acc:F4JFM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.