CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029673.1-P	Field mustard	nucleus	96.72	96.54
CDY35959	Canola	nucleus	96.9	96.02
AT3G07740.4	Thale cress	nucleus	77.01	76.04
KRG90027	Soybean	nucleus	8.58	55.95
KRH17664	Soybean	nucleus	54.74	52.45
VIT_12s0057g00920.t01	Wine grape	nucleus	53.65	51.49
CDY34465	Canola	nucleus	13.87	50.0
CDX90526	Canola	nucleus	42.34	49.47
CDY09696	Canola	nucleus	42.34	49.47
CDY42533	Canola	nucleus, plastid	43.07	48.56
CDY69435	Canola	nucleus	42.88	48.35
Solyc07g047610.2.1	Tomato	nucleus	48.91	47.86
EER90868	Sorghum	nucleus	48.54	47.08
Zm00001d013265_P003	Maize	nucleus	48.36	46.9
TraesCS5A01G390300.2	Wheat	nucleus	48.54	46.83
TraesCS5D01G400100.2	Wheat	nucleus	48.54	46.83
HORVU5Hr1G095400.7	Barley	nucleus	48.36	46.65
GSMUA_Achr6P00130_001	Banana	nucleus	48.72	46.52
Os03t0750800-01	Rice	nucleus	47.99	46.38
Zm00001d034033_P002	Maize	nucleus	47.81	46.37
TraesCS5B01G395200.1	Wheat	nucleus	44.71	45.37

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	GO:A0A078GRJ8
UniProt:A0A078GRJ8	InterPro:ADA2_plants	InterPro:Ada2/TADA2	EnsemblPlants:CDY28021	ProteinID:CDY28021	ProteinID:CDY28021.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035065	GO:GO:0046872
GO:GO:1903508	EnsemblPlantsGene:GSBRNA2T00038956001	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884
PFAM:PF00249	PFAM:PF00569	PIRSF:PIRSF025024	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291
SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0004EC4D96	InterPro:Znf_ZZ

Description

BnaC05g44230DTranscriptional adapter [Source:UniProtKB/TrEMBL;Acc:A0A078GRJ8]

Coordinates

chrLK032213:+:284803..287838

Molecular Weight (calculated)

61767.5 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.643

Length

548 amino acids

Sequence
(BLAST)

001: MGRSKLASRP APEDANPGKS KRKKLSSGTE NAPGPSVSIG GEAGNERKPG LYCCNYCDKD LSGLVRLKCA VCVDFDLCVE CFYVGVELNR HKSSHPYRVM
101: DNLSFPLVSS DWNADEEILL LEAIATYGFG NWKEVANYVG SKTLTECVDH FNSAYMQSPC FPLPDLSHTN GKSKDELLAM SKDHAVKKET PPLVNLSPKE
201: ELPMSVEINE EASGKEDSVD QPLPILAGVK KKANAPQTQD TIKLEAAKQL SERSVGEKKP RLPGKKVPFV TELYAYNLKR QEFEIEHDND AEQLLSDMEF
301: KDCDTDAERE QKLQVLHIYS KRLDERKRRK EFVLERNLLY PDQFELSLSA EERQIYNKCK VFARFHSKEE HKELIQKVIE EHRILKRIQD LQEARAAGCT
401: TTTEANRFIE EKRKKEAEEN LVRLNHGGPG SVAGKGLKSP RGLQRNLQPF GSESLSKATL PIICSSLDNW DVSGLLGADL LSETEKEMCN EMRILPAHYF
501: KMLETLASEI KKGTVKKKSD AYNFFRVEPS KVDRVYDLLI QKGIGESS

Best Arabidopsis Sequence Match ( AT3G07740.1 )
(BLAST)

001: MGRSKLASRP AEEDLNPGKS KRKKISLGPE NAAASISTGI EAGNERKPGL YCCNYCDKDL SGLVRFKCAV CMDFDLCVEC FSVGVELNRH KNSHPYRVMD
101: NLSFSLVTSD WNADEEILLL EAIATYGFGN WKEVADHVGS KTTTECIKHF NSAYMQSPCF PLPDLSHTIG KSKDELLAMS KDSAVKTEIP AFVRLSPKEE
201: LPVSAEIKHE ASGKVNEIDP PLSALAGVKK KGNVPQAKDI IKLEAAKQQS DRSVGEKKLR LPGEKVPLVT ELYGYNLKRE EFEIEHDNDA EQLLADMEFK
301: DSDTDAEREQ KLQVLRIYSK RLDERKRRKE FVLERNLLYP DQYEMSLSAE ERKIYKSCKV FARFQSKEEH KELIKKVIEE HQILRRIEDL QEARTAGCRT
401: TSDANRFIEE KRKKEAEESM LLRLNHGAPG SIAGKTLKSP RGLPRNLHPF GSDSLPKVTP PRIYSGLDTW DVDGLLGADL LSETEKKMCN ETRILPVHYL
501: KMLDILTREI KKGQIKKKSD AYSFFKVEPS KVDRVYDMLV HKGIGDST

Arabidopsis Description

ADA2ATranscriptional adapter [Source:UniProtKB/TrEMBL;Acc:F4JFM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.