Factsheet for VIT_12s0057g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90027	Soybean	nucleus	9.46	64.29
VIT_00s0194g00130.t01	Wine grape	nucleus	60.25	61.43
Solyc07g047610.2.1	Tomato	nucleus	59.02	60.18
KRH17664	Soybean	nucleus	60.07	59.97
GSMUA_Achr6P00130_001	Banana	nucleus	59.19	58.88
EER90868	Sorghum	nucleus	57.44	58.05
Zm00001d034033_P002	Maize	nucleus	57.27	57.88
Os03t0750800-01	Rice	nucleus	57.44	57.85
Zm00001d013265_P003	Maize	nucleus	57.09	57.7
HORVU5Hr1G095400.7	Barley	nucleus	56.92	57.22
TraesCS5D01G400100.2	Wheat	nucleus	56.74	57.04
TraesCS5A01G390300.2	Wheat	nucleus	56.57	56.87
TraesCS5B01G395200.1	Wheat	nucleus	52.71	55.74
CDY35959	Canola	nucleus	52.01	53.71
CDY28021	Canola	nucleus	51.49	53.65
Bra029673.1-P	Field mustard	nucleus	51.31	53.37
AT3G07740.4	Thale cress	nucleus	49.74	51.17

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	EntrezGene:100254619	wikigene:100254619	MapMan:15.3.4.1.2	MapMan:15.5.2.2
Gene3D:3.30.60.90	InterPro:ADA2_plants	EMBL:AM467157	InterPro:Ada2/TADA2	ProteinID:CAN61657	ProteinID:CAN61657.1
ProteinID:CCB51737	ProteinID:CCB51737.1	UniProt:F6HHP1	EMBL:FN595759	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0003713	GO:GO:0003824	GO:GO:0004402
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009409
GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538
GO:GO:0035065	GO:GO:0035066	GO:GO:1903508	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526
InterPro:IPR017884	EntrezGene:LOC100254619	wikigene:LOC100254619	PFAM:PF00249	PFAM:PF00569	PIRSF:PIRSF025024
PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39	InterPro:SANT/Myb
InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM
TIGR:TC56855	UniParc:UPI0001984701	ArrayExpress:VIT_12s0057g00920	EnsemblPlantsGene:VIT_12s0057g00920	EnsemblPlants:VIT_12s0057g00920.t01	unigene:Vvi.12822
RefSeq:XP_002268970	RefSeq:XP_002268970.2	InterPro:Znf_ZZ	SEG:seg	:	:

Description

Transcriptional adapter [Source:UniProtKB/TrEMBL;Acc:F6HHP1]

Coordinates

chr12:-:9624313..9631073

Molecular Weight (calculated)

64007.5 Da

IEP (calculated)

6.191

GRAVY (calculated)

-0.698

Length

571 amino acids

Sequence
(BLAST)

001: MGRSRAVLHS TDDDQGSHRS KRRKTASTAD NLEGATAGQG MSEGKRASYH CNYCSKDISG KIRTKCVVCP DFDLCIECFS IGAEVTPHVC FHPYRVMDNL
101: SFPLICPDWN ADEEMLLLEG IEMYGLGNWS EVSEHVGTKR KSECIDHYVA IYMNSPCFPL PDMSHVLGKT RAELLAMARG EDEVKKGSPT HGELTLKVES
201: PLSARVKQMH AKMCFSHLSE IQSDMVSSST KTSAGAVKRA SNMAQVKDGR DNIKVEETQT DRSVGEKKPR TSGDEGPSVT ELSGYNFKRQ EFDVEYDNDA
301: EQLLADMEFK DTDTDAEHEL KLQVLHIYSK RLDERKRRKD FILERNLLYP DPFEKNLSPE ERDVNQRFKV FMRFHSKEEH EELLRVVLEE HWIQKRIQDL
401: QDARAAGCRT SAEAERYLEE KGKKEAEESA QQAKESAEAG PSGGKVLQRV NTAKGESDGS PRGGGRGSAG LEPGIKDTSS TTAGHAILRS LDVWDITGFP
501: GEDLLSETEK QLCSEIRILP SHYLNMLHTM LTETLNGNIT RKSDAHGLFK VEPSKVDKVY DMFVKKGIVK S

Best Arabidopsis Sequence Match ( AT4G16420.2 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKDRSFG GKKPVSTSVN NSLVELSNYN QKREEFDPEY DNDAEQLLAE MEFKENDTPE EHELKLRVLR IYSKRLDERK RRKEFIIERN LLYPNPFEKD
301: LSQEEKVQCR RLDVFMRFHS KEEHDELLRN VVSEYRMVKR LKDLKEAQVA GCRSTAEAER YLGRKRKREN EEGMNRGKES GQFGQIAGEM GSRPPVQASS
401: SYVNDLDLIG FTESQLLSES EKRLCSEVKL VPPVYLQMQQ VMSHEIFKGN VTKKSDAYSL FKIDPTKVDR VYDMLVKKGI AQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.