Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0057g00920.t01 | Wine grape | nucleus | 60.18 | 59.02 |
| KRG90027 | Soybean | nucleus | 8.75 | 58.33 |
| GSMUA_Achr6P00130_001 | Banana | nucleus | 57.68 | 56.27 |
| HORVU5Hr1G095400.7 | Barley | nucleus | 56.96 | 56.16 |
| KRH17664 | Soybean | nucleus | 57.32 | 56.12 |
| Zm00001d034033_P002 | Maize | nucleus | 56.61 | 56.11 |
| Zm00001d013265_P003 | Maize | nucleus | 56.61 | 56.11 |
| Os03t0750800-01 | Rice | nucleus | 56.79 | 56.08 |
| EER90868 | Sorghum | nucleus | 56.43 | 55.93 |
| TraesCS5A01G390300.2 | Wheat | nucleus | 56.61 | 55.81 |
| TraesCS5D01G400100.2 | Wheat | nucleus | 56.61 | 55.81 |
| Solyc05g054200.2.1 | Tomato | nucleus | 54.11 | 55.8 |
| TraesCS5B01G395200.1 | Wheat | nucleus | 52.14 | 54.07 |
| CDY35959 | Canola | nucleus | 48.57 | 49.19 |
| Bra029673.1-P | Field mustard | nucleus | 48.21 | 49.18 |
| CDY28021 | Canola | nucleus | 47.86 | 48.91 |
| AT3G07740.4 | Thale cress | nucleus | 47.5 | 47.93 |
Protein Annotations
Description
Transcriptional adapter [Source:UniProtKB/TrEMBL;Acc:K4CEW8]
Coordinates
chr7:-:58827137..58842939
Molecular Weight (calculated)
63146.6 Da
IEP (calculated)
6.376
GRAVY (calculated)
-0.715
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSRAVHQS TDDDPSQRSK RKRAVPNVES FDTAATGQIL TEGKKALYHC NYCNKDISGR IRIKCVVCSD FDLCVECFSV GAEVQPHKSN HLYRVMDNLS
101: FPLICADWNA DEEMLLLEGL EMYGLANWAE VAEHVGTKSK QQCIDHYKST YISSPCFPLP DMSHVMGKNR EELLAMAKDQ GYAAPGGVNV KEESPFSAGI
201: KMEDQREENS TGLASVGGSA SGTLAGAGKR TSSLLHSKEN HDSIKVEGCP ADRSVGEKKP RSSVDEGPSM TELSGYNSKR EEFEIEYDND AEQMVADMEF
301: KETDTNAERE LKLRVLRIYN KRLDERKRRK DFILERKLLH PDPFEKDLTP EEKDICRRYR VFMRFSSKEE HEDFLRSIIE EHRIVKRIRD LQDARIAGCR
401: TLAEAERYVE QKRARESEEN IRRLKENTQS GPSGKYLQRA GHFKVEHDSS PRGVGRGPEM MDCCNDLSST TAPHGVGSAV DIWDVSGFSG AELLSEAEKK
501: LCDEMRILPA HYLNMSQTMS MGIFNGNITK KSDAHGLFNV DPNKIDKVYE MLVKKGLAQA
101: FPLICADWNA DEEMLLLEGL EMYGLANWAE VAEHVGTKSK QQCIDHYKST YISSPCFPLP DMSHVMGKNR EELLAMAKDQ GYAAPGGVNV KEESPFSAGI
201: KMEDQREENS TGLASVGGSA SGTLAGAGKR TSSLLHSKEN HDSIKVEGCP ADRSVGEKKP RSSVDEGPSM TELSGYNSKR EEFEIEYDND AEQMVADMEF
301: KETDTNAERE LKLRVLRIYN KRLDERKRRK DFILERKLLH PDPFEKDLTP EEKDICRRYR VFMRFSSKEE HEDFLRSIIE EHRIVKRIRD LQDARIAGCR
401: TLAEAERYVE QKRARESEEN IRRLKENTQS GPSGKYLQRA GHFKVEHDSS PRGVGRGPEM MDCCNDLSST TAPHGVGSAV DIWDVSGFSG AELLSEAEKK
501: LCDEMRILPA HYLNMSQTMS MGIFNGNITK KSDAHGLFNV DPNKIDKVYE MLVKKGLAQA
001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL
Arabidopsis Description
ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.