Factsheet for Zm00001d013265_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002618_P001
Zm00001d006169_P001
Zm00001d006170_P001
Zm00001d014175_P004
Zm00001d017592_P001
Zm00001d021205_P001
Zm00001d021207_P001
Zm00001d021208_P001
Zm00001d031728_P001
Zm00001d036003_P001
Zm00001d041981_P001
Zm00001d052732_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	Zm00001d014175_P004	AT3G54610.1	16603259
AT4G16420.1	Zm00001d014175_P004	AT3G54610.1	21798944
AT4G16420.1	Zm00001d002618_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d006169_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d006170_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d017592_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d021205_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d021207_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d021208_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d031728_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d036003_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d041981_P001	AT4G25490.1	16603259
AT4G16420.1	Zm00001d052732_P001	AT4G25490.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90868	Sorghum	nucleus	95.75	95.75
Zm00001d034033_P002	Maize	nucleus	95.04	95.04
Os03t0750800-01	Rice	nucleus	88.5	88.18
TraesCS5D01G400100.2	Wheat	nucleus	87.61	87.15
TraesCS5A01G390300.2	Wheat	nucleus	87.61	87.15
TraesCS5B01G395200.1	Wheat	nucleus	83.19	87.04
HORVU5Hr1G095400.7	Barley	nucleus	86.73	86.27
GSMUA_Achr6P00130_001	Banana	nucleus	72.74	71.6
VIT_00s0194g00130.t01	Wine grape	nucleus	60.88	61.43
CDY34465	Canola	nucleus	15.93	59.21
KRH36579	Soybean	nucleus	58.05	59.21
KRH11557	Soybean	nucleus	56.99	58.12
VIT_12s0057g00920.t01	Wine grape	nucleus	57.7	57.09
AT4G16420.1	Thale cress	nucleus	49.2	57.08
CDX90526	Canola	nucleus	47.26	56.93
CDY42533	Canola	nucleus, plastid	48.85	56.79
CDY09696	Canola	nucleus	47.08	56.72
Bra012721.1-P	Field mustard	nucleus	47.08	56.72
Solyc07g047610.2.1	Tomato	nucleus	56.11	56.61
Bra040578.1-P	Field mustard	nucleus	48.67	56.58
CDY69435	Canola	nucleus	48.5	56.38
PGSC0003DMT400021785	Potato	nucleus	52.74	54.88
Solyc05g054200.2.1	Tomato	nucleus	52.74	54.88
KRG90028	Soybean	nucleus	25.13	54.2
KRH17664	Soybean	nucleus	53.27	52.62
KRG90027	Soybean	nucleus	7.61	51.19
CDY28021	Canola	nucleus	46.9	48.36
CDY35959	Canola	nucleus	47.08	48.1
Bra029673.1-P	Field mustard	nucleus	46.37	47.72
AT3G07740.4	Thale cress	nucleus	46.73	47.57

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	EntrezGene:100194167	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90
EntrezGene:542677	InterPro:ADA2_plants	ProteinID:AQK62821.1	ProteinID:AQK62826.1	EMBL:AY100479	InterPro:Ada2/TADA2
EMBL:BT066413	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0035065	GO:GO:0046872	GO:GO:1903508	InterPro:Homeobox-like_sf
InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	EMBL:KJ727582	PFAM:PF00249	PFAM:PF00569
PIRSF:PIRSF025024	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12374
PANTHER:PTHR12374:SF39	UniProt:Q8L8G6	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI000009EBAD	EnsemblPlantsGene:Zm00001d013265	EnsemblPlants:Zm00001d013265_P003
EnsemblPlants:Zm00001d013265_T003	InterPro:Znf_ZZ	SEG:seg	:	:	:

Description

MYB-related-transcription factor 106Transcriptional adapter ADA2b

Coordinates

chr5:-:7397790..7406519

Molecular Weight (calculated)

63368.4 Da

IEP (calculated)

7.705

GRAVY (calculated)

-0.707

Length

565 amino acids

Sequence
(BLAST)

001: MGRSRGVLSS GDDDTGHRSK RRRVSSGGDA TDSISASIGG AGEGGGKKAL YHCNYCNKDI SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYKVMD
101: NLSFPLICPD WNADEEILLL EGIEMYGLGN WLEVAEHVGT KSKLQCIDHY TSAYMNSPCY PLPDMSHVNG KNRKELLAMA KVQGESKKGT LLLPGELTPK
201: VESQFSPSRV KVEDALGEGP AGRSPSHMAV GANKKASNVG HIKDGATVSK VEDVHVDRSV GVKKPRYSAD EGPSLTELSG YNAKRHEFDP EYDNDAEQAL
301: AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPLE KDLTSEDREL YHRYKVFMRF LSKEEHEALV RSVIEERKIR RRIQELQECR
401: SAGCRTLAEA KIHIEQKRKK EYELNAQKAK DSSQLNANNK SVQKMNRPMK IESDGNLDPK KGGAGLDSPK TTGPTSVKQW DDWDIVGLPG AELLSASEKL
501: LCCQNRLLPS HYLRMQEVLM QEIFKGSVLK KEDAHVLFKV DPTKVDSVYD MVSKKLGNHE EAPTV

Best Arabidopsis Sequence Match ( AT4G16420.1 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.