Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013265_P003 | |
| Zm00001d014175_P004 | |
| Zm00001d034033_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Zm00001d014175_P004 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Zm00001d013265_P003 | AT4G16420.1 | 16603259 |
| AT4G25490.1 | Zm00001d034033_P002 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99213 | Sorghum | nucleus | 87.88 | 86.38 |
| Zm00001d021207_P001 | Maize | nucleus | 74.46 | 72.27 |
| EER99214 | Sorghum | plastid | 73.59 | 69.67 |
| Os09t0522200-01 | Rice | nucleus | 70.13 | 68.07 |
| Zm00001d006170_P001 | Maize | nucleus | 67.53 | 67.83 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 65.37 | 63.98 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 65.8 | 63.87 |
| TraesCS5A01G312000.1 | Wheat | plastid | 64.07 | 61.16 |
| Zm00001d052732_P001 | Maize | plastid | 53.25 | 55.16 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 66.23 | 50.83 |
| Zm00001d021205_P001 | Maize | plastid | 54.11 | 50.81 |
| Zm00001d031728_P001 | Maize | nucleus, plastid | 48.48 | 49.34 |
| Zm00001d006169_P001 | Maize | plastid | 51.95 | 45.45 |
| Solyc03g026270.1.1 | Tomato | nucleus | 35.06 | 39.51 |
| PGSC0003DMT400037122 | Potato | nucleus | 35.93 | 38.25 |
| AT1G63030.2 | Thale cress | nucleus | 29.87 | 38.12 |
| Bra019162.1-P | Field mustard | nucleus | 35.06 | 37.85 |
| CDY70584 | Canola | nucleus | 35.06 | 37.85 |
| Zm00001d002618_P001 | Maize | nucleus | 36.36 | 37.84 |
| CDX92710 | Canola | nucleus | 35.06 | 37.67 |
| Solyc03g026280.2.1 | Tomato | nucleus | 34.2 | 37.62 |
| Bra027612.1-P | Field mustard | nucleus | 29.87 | 37.3 |
| CDY49205 | Canola | nucleus | 29.87 | 37.3 |
| Zm00001d017592_P001 | Maize | nucleus | 37.23 | 37.23 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 35.06 | 37.16 |
| Bra022770.1-P | Field mustard | nucleus | 34.2 | 36.92 |
| CDY66018 | Canola | nucleus | 34.2 | 36.92 |
| CDX84868 | Canola | nucleus | 34.2 | 36.92 |
| AT4G25480.1 | Thale cress | nucleus | 34.2 | 36.57 |
| CDY52356 | Canola | nucleus | 34.2 | 36.41 |
| AT4G25490.1 | Thale cress | nucleus | 33.33 | 36.15 |
| KRH35383 | Soybean | nucleus | 32.03 | 36.1 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.6 | 35.96 |
| PGSC0003DMT400010876 | Potato | nucleus | 32.03 | 35.75 |
| AT4G25470.1 | Thale cress | nucleus | 33.33 | 35.65 |
| CDY71145 | Canola | nucleus | 31.17 | 35.64 |
| Bra016763.1-P | Field mustard | nucleus | 31.17 | 35.64 |
| KRG91437 | Soybean | nucleus | 31.6 | 35.27 |
| Solyc03g124110.1.1 | Tomato | nucleus | 33.33 | 35.0 |
| CDY52360 | Canola | nucleus | 33.33 | 34.84 |
| PGSC0003DMT400037120 | Potato | nucleus | 35.5 | 34.75 |
| CDY65499 | Canola | nucleus | 32.47 | 34.72 |
| CDY31270 | Canola | nucleus | 30.3 | 34.65 |
| AT1G12610.1 | Thale cress | nucleus | 31.17 | 34.45 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.18 | 34.43 |
| CDY57075 | Canola | nucleus | 30.74 | 34.3 |
| Zm00001d041981_P001 | Maize | nucleus | 36.36 | 34.29 |
| CDY00510 | Canola | nucleus | 32.47 | 34.09 |
| Bra028290.1-P | Field mustard | nucleus | 32.47 | 34.09 |
| Zm00001d036003_P001 | Maize | nucleus | 34.2 | 34.05 |
| Bra019777.1-P | Field mustard | nucleus | 30.3 | 33.98 |
| AT5G51990.1 | Thale cress | nucleus | 32.9 | 33.93 |
| CDY16016 | Canola | nucleus | 29.44 | 33.83 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 33.77 | 33.19 |
| CDY31925 | Canola | nucleus | 31.6 | 33.18 |
| Bra026963.1-P | Field mustard | nucleus | 29.44 | 33.17 |
| CDY26574 | Canola | nucleus | 29.44 | 33.17 |
| KRH77483 | Soybean | nucleus | 32.03 | 32.74 |
| KRH09144 | Soybean | nucleus | 32.03 | 32.03 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 17.75 | 31.54 |
| Solyc08g007830.1.1 | Tomato | nucleus | 31.17 | 31.44 |
| PGSC0003DMT400032622 | Potato | nucleus | 32.03 | 31.09 |
| PGSC0003DMT400037121 | Potato | nucleus | 34.63 | 31.01 |
| Solyc08g007820.1.1 | Tomato | nucleus | 32.47 | 30.74 |
| KRH57258 | Soybean | nucleus | 33.33 | 30.32 |
| Bra010461.1-P | Field mustard | nucleus | 33.77 | 30.23 |
| CDY52358 | Canola | nucleus | 24.68 | 30.16 |
| PGSC0003DMT400032621 | Potato | nucleus | 31.6 | 29.92 |
| CDY66013 | Canola | nucleus | 24.68 | 29.84 |
| KRH03987 | Soybean | nucleus | 32.9 | 29.8 |
| PGSC0003DMT400032623 | Potato | nucleus | 31.6 | 29.32 |
| Bra010460.1-P | Field mustard | nucleus | 33.33 | 28.0 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.15 | 26.12 |
| Bra010463.1-P | Field mustard | nucleus | 25.11 | 25.89 |
| PGSC0003DMT400090651 | Potato | nucleus | 32.47 | 22.8 |
| KRH38616 | Soybean | plastid | 31.6 | 22.32 |
Protein Annotations
| EntrezGene:103633049 | Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A060CXG3 | ProteinID:AIB05196.1 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | ProteinID:ONM56546.1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF10 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002219A41 | EnsemblPlantsGene:Zm00001d021208 |
| EnsemblPlants:Zm00001d021208_P001 | EnsemblPlants:Zm00001d021208_T001 | SEG:seg | : | : | : |
Description
AP2-EREBP-transcription factor 115Dehydration-responsive element-binding protein 1B
Coordinates
chr7:-:146038525..146039307
Molecular Weight (calculated)
24634.6 Da
IEP (calculated)
5.572
GRAVY (calculated)
-0.274
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPTKKGMTG EPSSPCRSAS ASTLPEHHQT VWTSPPKRPA GRTKFRETRH PVFRGVRRRG SAGRWVCEVR VPGRRGCRLW LGTFDTAEAA ARAHDAAMLA
101: LAGAAACCLN FADSAWLLAV PASCASLAEV RHAVADAVED FLRHQVVPED DALAATPSSP SSEDGNTSDG GESSSDSSPP TGASPFEFDV FNDMSWDLHY
201: ASLAQGLLVE PPSAVTAFMD EGFADVPLWS Y
101: LAGAAACCLN FADSAWLLAV PASCASLAEV RHAVADAVED FLRHQVVPED DALAATPSSP SSEDGNTSDG GESSSDSSPP TGASPFEFDV FNDMSWDLHY
201: ASLAQGLLVE PPSAVTAFMD EGFADVPLWS Y
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.