Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G313000.1 | Wheat | nucleus | 72.76 | 92.8 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 72.43 | 91.6 |
| TraesCS5A01G312000.1 | Wheat | plastid | 71.1 | 88.43 |
| EER99213 | Sorghum | nucleus | 55.48 | 71.06 |
| Os09t0522200-01 | Rice | nucleus | 56.15 | 71.01 |
| EER99212 | Sorghum | nucleus, plastid | 55.15 | 69.17 |
| Zm00001d021208_P001 | Maize | plastid | 50.83 | 66.23 |
| Zm00001d021207_P001 | Maize | nucleus | 51.83 | 65.55 |
| EER99214 | Sorghum | plastid | 51.83 | 63.93 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 17.28 | 49.52 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 40.2 | 49.39 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 38.87 | 48.55 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 37.21 | 48.07 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 35.55 | 47.77 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 21.26 | 47.76 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 39.87 | 44.78 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 41.53 | 44.01 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 30.9 | 42.86 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 31.89 | 42.67 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 29.57 | 41.59 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 29.9 | 40.72 |
| AT1G63030.2 | Thale cress | nucleus | 24.25 | 40.33 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 29.24 | 39.29 |
| Bra027612.1-P | Field mustard | nucleus | 23.92 | 38.92 |
| CDY49205 | Canola | nucleus | 23.92 | 38.92 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 28.9 | 38.67 |
| CDX92710 | Canola | nucleus | 27.24 | 38.14 |
| CDY70584 | Canola | nucleus | 26.91 | 37.85 |
| Bra019162.1-P | Field mustard | nucleus | 26.91 | 37.85 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 26.91 | 37.16 |
| KRH35383 | Soybean | nucleus | 25.25 | 37.07 |
| Solyc03g026270.1.1 | Tomato | nucleus | 25.25 | 37.07 |
| CDX84868 | Canola | nucleus | 26.25 | 36.92 |
| Bra022770.1-P | Field mustard | nucleus | 26.25 | 36.92 |
| KRG91437 | Soybean | nucleus | 25.25 | 36.72 |
| Solyc03g026280.2.1 | Tomato | nucleus | 25.58 | 36.67 |
| CDY66018 | Canola | nucleus | 25.91 | 36.45 |
| PGSC0003DMT400037122 | Potato | nucleus | 26.25 | 36.41 |
| CDY52356 | Canola | nucleus | 26.25 | 36.41 |
| AT4G25480.1 | Thale cress | nucleus | 25.58 | 35.65 |
| CDY71145 | Canola | nucleus | 23.92 | 35.64 |
| Bra016763.1-P | Field mustard | nucleus | 23.92 | 35.64 |
| Solyc03g124110.1.1 | Tomato | nucleus | 25.91 | 35.45 |
| CDY16016 | Canola | nucleus | 23.59 | 35.32 |
| CDY57075 | Canola | nucleus | 24.25 | 35.27 |
| AT4G25490.1 | Thale cress | nucleus | 24.92 | 35.21 |
| AT4G25470.1 | Thale cress | nucleus | 25.25 | 35.19 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 23.92 | 35.12 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 33.89 | 35.05 |
| Bra019777.1-P | Field mustard | nucleus | 23.92 | 34.95 |
| CDY52360 | Canola | nucleus | 25.58 | 34.84 |
| AT5G51990.1 | Thale cress | nucleus | 25.91 | 34.82 |
| PGSC0003DMT400010876 | Potato | nucleus | 23.92 | 34.78 |
| CDY65499 | Canola | nucleus | 24.92 | 34.72 |
| CDY31270 | Canola | nucleus | 23.26 | 34.65 |
| Bra026963.1-P | Field mustard | nucleus | 23.59 | 34.63 |
| CDY26574 | Canola | nucleus | 23.59 | 34.63 |
| Bra028290.1-P | Field mustard | nucleus | 25.25 | 34.55 |
| CDY00510 | Canola | nucleus | 25.25 | 34.55 |
| Solyc12g056430.1.1 | Tomato | nucleus | 23.26 | 34.48 |
| AT1G12610.1 | Thale cress | nucleus | 23.92 | 34.45 |
| PGSC0003DMT400037120 | Potato | nucleus | 26.58 | 33.9 |
| CDY31925 | Canola | nucleus | 24.58 | 33.64 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 26.25 | 33.62 |
| KRH77483 | Soybean | nucleus | 24.58 | 32.74 |
| KRH09144 | Soybean | nucleus | 24.25 | 31.6 |
| PGSC0003DMT400032622 | Potato | nucleus | 24.58 | 31.09 |
| PGSC0003DMT400037121 | Potato | nucleus | 26.58 | 31.01 |
| Solyc08g007820.1.1 | Tomato | nucleus | 24.92 | 30.74 |
| KRH57258 | Soybean | nucleus | 25.91 | 30.71 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 12.29 | 30.33 |
| PGSC0003DMT400032621 | Potato | nucleus | 24.58 | 30.33 |
| Solyc08g007830.1.1 | Tomato | nucleus | 22.92 | 30.13 |
| Bra010461.1-P | Field mustard | nucleus | 25.58 | 29.84 |
| KRH03987 | Soybean | nucleus | 24.92 | 29.41 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 12.62 | 29.23 |
| CDY52358 | Canola | nucleus | 18.27 | 29.1 |
| PGSC0003DMT400032623 | Potato | nucleus | 23.92 | 28.92 |
| CDY66013 | Canola | nucleus | 18.27 | 28.8 |
| Bra010460.1-P | Field mustard | nucleus | 25.25 | 27.64 |
| Bra010463.1-P | Field mustard | nucleus | 18.94 | 25.45 |
| PGSC0003DMT400006896 | Potato | cytosol | 10.3 | 23.13 |
| PGSC0003DMT400090651 | Potato | nucleus | 25.25 | 23.1 |
| KRH38616 | Soybean | plastid | 24.92 | 22.94 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A287RZC3 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G080450 | EnsemblPlants:HORVU5Hr1G080450.1 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 |
| PANTHER:PTHR31839:SF10 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B4624F4 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr5H:-:560731226..560732948
Molecular Weight (calculated)
32345.6 Da
IEP (calculated)
7.500
GRAVY (calculated)
-0.518
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: LPKPPCSNFS SHSKTTTSHS TRATITRTSS RPKKKEESHP EQSKTTLSCW TLIGAKKMCQ IKKEMSGESG SPCSGENYYY SPSTSPEHQQ AKQQAAWTSA
101: PAKRPAGRTK FRETRHPVYR GVRRRGNAGR WVCEVRVPGR RGSRLWLGTF DTAEAAARAN DAAMLALAAG GAGCLNFADS AELLAVPAAS SYRSLDEVRH
201: AVVEAVEDLL RREAHAEDDA LSVSCTSSSA PSSLTDDESS SSPAAEGSPF ELDVLSDMGW DLYYASLAQG MLMAPPASLA AALADYGEAH LADVPLWSYQ
301: S
101: PAKRPAGRTK FRETRHPVYR GVRRRGNAGR WVCEVRVPGR RGSRLWLGTF DTAEAAARAN DAAMLALAAG GAGCLNFADS AELLAVPAAS SYRSLDEVRH
201: AVVEAVEDLL RREAHAEDDA LSVSCTSSSA PSSLTDDESS SSPAAEGSPF ELDVLSDMGW DLYYASLAQG MLMAPPASLA AALADYGEAH LADVPLWSYQ
301: S
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.