Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G317100.1 | Wheat | nucleus, plastid | 86.94 | 94.05 |
| TraesCS5B01G310800.1 | Wheat | nucleus | 86.94 | 94.05 |
| TraesCS5A01G310100.1 | Wheat | nucleus | 85.22 | 92.19 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 64.6 | 83.56 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 48.11 | 65.42 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 43.99 | 57.92 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 43.99 | 57.14 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 22.34 | 48.51 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 32.3 | 43.32 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 33.68 | 42.06 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 33.68 | 40.66 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 34.02 | 40.41 |
| AT1G63030.2 | Thale cress | nucleus | 25.09 | 40.33 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 30.93 | 40.18 |
| Solyc03g026270.1.1 | Tomato | nucleus | 28.18 | 40.0 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 14.43 | 40.0 |
| KRH35383 | Soybean | nucleus | 27.84 | 39.51 |
| Bra027612.1-P | Field mustard | nucleus | 25.09 | 39.46 |
| CDY49205 | Canola | nucleus | 25.09 | 39.46 |
| KRG91437 | Soybean | nucleus | 27.84 | 39.13 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 30.24 | 39.11 |
| PGSC0003DMT400037122 | Potato | nucleus | 28.87 | 38.71 |
| CDY52356 | Canola | nucleus | 28.52 | 38.25 |
| CDX92710 | Canola | nucleus | 28.18 | 38.14 |
| Solyc03g026280.2.1 | Tomato | nucleus | 27.49 | 38.1 |
| AT4G25490.1 | Thale cress | nucleus | 27.84 | 38.03 |
| AT4G25480.1 | Thale cress | nucleus | 28.18 | 37.96 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 28.18 | 37.61 |
| CDY66018 | Canola | nucleus | 27.49 | 37.38 |
| Bra022770.1-P | Field mustard | nucleus | 27.49 | 37.38 |
| CDX84868 | Canola | nucleus | 27.49 | 37.38 |
| CDY71145 | Canola | nucleus | 25.77 | 37.13 |
| Bra016763.1-P | Field mustard | nucleus | 25.77 | 37.13 |
| CDY52360 | Canola | nucleus | 28.18 | 37.1 |
| CDY65499 | Canola | nucleus | 27.49 | 37.04 |
| CDY70584 | Canola | nucleus | 27.15 | 36.92 |
| Bra019162.1-P | Field mustard | nucleus | 27.15 | 36.92 |
| Bra019777.1-P | Field mustard | nucleus | 26.12 | 36.89 |
| Bra028290.1-P | Field mustard | nucleus | 27.84 | 36.82 |
| CDY00510 | Canola | nucleus | 27.84 | 36.82 |
| CDY57075 | Canola | nucleus | 26.12 | 36.72 |
| AT5G51990.1 | Thale cress | nucleus | 28.18 | 36.61 |
| AT4G25470.1 | Thale cress | nucleus | 27.15 | 36.57 |
| Solyc12g056430.1.1 | Tomato | nucleus | 25.43 | 36.45 |
| CDY31925 | Canola | nucleus | 27.49 | 36.36 |
| CDY16016 | Canola | nucleus | 25.09 | 36.32 |
| CDY31270 | Canola | nucleus | 25.09 | 36.14 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 25.43 | 36.1 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 35.05 | 35.92 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 41.24 | 35.82 |
| PGSC0003DMT400010876 | Potato | nucleus | 25.43 | 35.75 |
| Bra026963.1-P | Field mustard | nucleus | 25.09 | 35.61 |
| CDY26574 | Canola | nucleus | 25.09 | 35.61 |
| AT1G12610.1 | Thale cress | nucleus | 25.43 | 35.41 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 32.3 | 35.07 |
| Solyc03g124110.1.1 | Tomato | nucleus | 26.46 | 35.0 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 27.84 | 34.47 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 14.43 | 34.43 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 35.05 | 33.89 |
| PGSC0003DMT400037120 | Potato | nucleus | 26.8 | 33.05 |
| KRH09144 | Soybean | nucleus | 26.12 | 32.9 |
| CDY52358 | Canola | nucleus | 21.31 | 32.8 |
| KRH77483 | Soybean | nucleus | 25.43 | 32.74 |
| CDY66013 | Canola | nucleus | 21.31 | 32.46 |
| Bra010461.1-P | Field mustard | nucleus | 28.52 | 32.17 |
| KRH57258 | Soybean | nucleus | 27.84 | 31.89 |
| Solyc08g007830.1.1 | Tomato | nucleus | 25.09 | 31.88 |
| PGSC0003DMT400037121 | Potato | nucleus | 28.18 | 31.78 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 14.09 | 31.54 |
| PGSC0003DMT400032622 | Potato | nucleus | 25.09 | 30.67 |
| KRH03987 | Soybean | nucleus | 26.46 | 30.2 |
| PGSC0003DMT400032621 | Potato | nucleus | 25.09 | 29.92 |
| Solyc08g007820.1.1 | Tomato | nucleus | 24.74 | 29.51 |
| Bra010460.1-P | Field mustard | nucleus | 27.84 | 29.45 |
| PGSC0003DMT400032623 | Potato | nucleus | 25.09 | 29.32 |
| Bra010463.1-P | Field mustard | nucleus | 21.65 | 28.12 |
| PGSC0003DMT400006896 | Potato | cytosol | 12.03 | 26.12 |
| KRH38616 | Soybean | plastid | 26.8 | 23.85 |
| PGSC0003DMT400090651 | Potato | nucleus | 25.77 | 22.8 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | ProteinID:ACA29497.1 | ProteinID:ACA29498.1 | ProteinID:ACA29499.1 | ProteinID:ACA29500.1 |
| ProteinID:ACA29501.1 | ProteinID:ACA29502.1 | ProteinID:ACA29503.1 | ProteinID:ACA29504.1 | ProteinID:ACA29505.1 | ProteinID:ACA29506.1 |
| ProteinID:ACA29507.1 | ProteinID:ACA29523.1 | ProteinID:ACC63517.1 | ProteinID:AGW47699.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EMBL:AY785877 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU5Hr1G080230 | EnsemblPlants:HORVU5Hr1G080230.1 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | UniProt:Q3T5P1 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI00005B29AE | SEG:seg | : | : | : | : |
Description
C-repeat binding factor 9 [Source:UniProtKB/TrEMBL;Acc:Q3T5P1]
Coordinates
chrchr5H:-:559462516..559464023
Molecular Weight (calculated)
31198.7 Da
IEP (calculated)
8.957
GRAVY (calculated)
0.081
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPIQTDVA GIASPSGQQE QQGHRTVSSE PPKRPAGRTK FHETRHPLYR GVRRRGRVGQ WVCEVRVPGI KGSRLWLGTF NTAEMAARAH DAAALALSGR
101: AACLNFADSA WRMLPVLAAG SFGFGSAREV KAAVAVAVVA FQRRQIIPVA VAVVALQKQQ VPVAVAVVTL QQKQQQVPVA VAVSALQQQQ VPVAVAVVAL
201: QQLQVPVAVA VVALQEQQII LPVACLAPEF YMSSGDLLEL DEEQWFGGMD AGSYYASLAQ GMLVAPPDER ARPEHGEQTG VQTPLWSCLF N
101: AACLNFADSA WRMLPVLAAG SFGFGSAREV KAAVAVAVVA FQRRQIIPVA VAVVALQKQQ VPVAVAVVTL QQKQQQVPVA VAVSALQQQQ VPVAVAVVAL
201: QQLQVPVAVA VVALQEQQII LPVACLAPEF YMSSGDLLEL DEEQWFGGMD AGSYYASLAQ GMLVAPPDER ARPEHGEQTG VQTPLWSCLF N
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.