Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G310800.1 | Wheat | nucleus | 95.54 | 95.54 |
| TraesCS5D01G317100.1 | Wheat | nucleus, plastid | 95.17 | 95.17 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 92.19 | 85.22 |
| TraesCS5A01G310700.1 | Wheat | nucleus | 69.89 | 84.68 |
| TraesCS5A01G310500.1 | Wheat | nucleus, plastid | 86.25 | 84.36 |
| TraesCS5A01G310200.1 | Wheat | nucleus | 61.34 | 77.83 |
| TraesCS5A01G311300.1 | Wheat | nucleus | 52.79 | 66.98 |
| TraesCS5A01G310800.1 | Wheat | nucleus | 53.53 | 66.67 |
| TraesCS5A01G311000.1 | Wheat | nucleus | 47.58 | 58.18 |
| TraesCS5A01G310600.1 | Wheat | nucleus | 48.33 | 57.78 |
| TraesCS5A01G310400.1 | Wheat | nucleus | 48.33 | 56.52 |
| TraesCS5A01G311700.1 | Wheat | nucleus | 37.17 | 42.92 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 33.83 | 41.94 |
| TraesCS5A01G311100.1 | Wheat | nucleus | 36.43 | 41.88 |
| AT1G63030.2 | Thale cress | nucleus | 27.88 | 41.44 |
| TraesCS6A01G186400.1 | Wheat | plastid | 36.06 | 40.93 |
| Bra027612.1-P | Field mustard | nucleus | 27.88 | 40.54 |
| CDY49205 | Canola | nucleus | 27.88 | 40.54 |
| Solyc03g026270.1.1 | Tomato | nucleus | 30.86 | 40.49 |
| TraesCS5A01G310000.1 | Wheat | plastid | 37.17 | 40.49 |
| TraesCS6A01G381200.1 | Wheat | plastid | 36.43 | 40.0 |
| TraesCS6A01G381000.1 | Wheat | nucleus | 36.43 | 39.84 |
| TraesCS5A01G312000.1 | Wheat | plastid | 35.69 | 39.67 |
| PGSC0003DMT400037122 | Potato | nucleus | 31.97 | 39.63 |
| KRH35383 | Soybean | nucleus | 30.11 | 39.51 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 31.97 | 39.45 |
| TraesCS5A01G311800.1 | Wheat | plastid | 35.69 | 39.34 |
| TraesCS5A01G311900.1 | Wheat | nucleus | 34.94 | 39.33 |
| KRG91437 | Soybean | nucleus | 30.11 | 39.13 |
| Solyc03g026280.2.1 | Tomato | nucleus | 30.48 | 39.05 |
| AT4G25490.1 | Thale cress | nucleus | 30.86 | 38.97 |
| AT4G25480.1 | Thale cress | nucleus | 31.23 | 38.89 |
| CDY66018 | Canola | nucleus | 30.86 | 38.78 |
| Bra022770.1-P | Field mustard | nucleus | 30.86 | 38.78 |
| CDX84868 | Canola | nucleus | 30.86 | 38.78 |
| TraesCS5A01G311600.1 | Wheat | nucleus | 35.32 | 38.78 |
| TraesCS5A01G311500.1 | Wheat | nucleus, plastid | 34.2 | 38.66 |
| CDY00510 | Canola | nucleus | 31.6 | 38.64 |
| Bra028290.1-P | Field mustard | nucleus | 31.6 | 38.64 |
| Bra016763.1-P | Field mustard | nucleus | 29.0 | 38.61 |
| CDY71145 | Canola | nucleus | 29.0 | 38.61 |
| CDX92710 | Canola | nucleus | 30.86 | 38.6 |
| Bra019777.1-P | Field mustard | nucleus | 29.37 | 38.35 |
| Bra019162.1-P | Field mustard | nucleus | 30.48 | 38.32 |
| CDY70584 | Canola | nucleus | 30.48 | 38.32 |
| CDY52356 | Canola | nucleus | 30.86 | 38.25 |
| CDY31925 | Canola | nucleus | 31.23 | 38.18 |
| CDY57075 | Canola | nucleus | 29.37 | 38.16 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 30.86 | 38.07 |
| AT5G51990.1 | Thale cress | nucleus | 31.6 | 37.95 |
| TraesCS7A01G057800.1 | Wheat | nucleus, plastid | 29.37 | 37.62 |
| AT4G25470.1 | Thale cress | nucleus | 30.11 | 37.5 |
| CDY16016 | Canola | nucleus | 27.88 | 37.31 |
| CDY31270 | Canola | nucleus | 27.88 | 37.13 |
| CDY52360 | Canola | nucleus | 30.48 | 37.1 |
| CDY65499 | Canola | nucleus | 29.74 | 37.04 |
| TraesCS4A01G433300.1 | Wheat | nucleus | 29.74 | 37.04 |
| AT1G12610.1 | Thale cress | nucleus | 28.62 | 36.84 |
| Bra026963.1-P | Field mustard | nucleus | 27.88 | 36.59 |
| CDY26574 | Canola | nucleus | 27.88 | 36.59 |
| Solyc03g124110.1.1 | Tomato | nucleus | 29.74 | 36.36 |
| TraesCS5A01G310900.1 | Wheat | mitochondrion | 23.42 | 35.8 |
| Solyc12g056430.1.1 | Tomato | nucleus | 26.77 | 35.47 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 30.86 | 35.32 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 15.99 | 35.25 |
| PGSC0003DMT400010876 | Potato | nucleus | 26.77 | 34.78 |
| TraesCS7A01G057700.1 | Wheat | nucleus | 29.0 | 34.67 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 43.12 | 34.63 |
| TraesCS4A01G433200.1 | Wheat | nucleus | 28.62 | 33.77 |
| PGSC0003DMT400037120 | Potato | nucleus | 29.37 | 33.47 |
| KRH09144 | Soybean | nucleus | 28.62 | 33.33 |
| CDY52358 | Canola | nucleus | 23.05 | 32.8 |
| KRH77483 | Soybean | nucleus | 27.51 | 32.74 |
| CDY66013 | Canola | nucleus | 23.05 | 32.46 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 15.61 | 32.31 |
| PGSC0003DMT400037121 | Potato | nucleus | 30.86 | 32.17 |
| Bra010461.1-P | Field mustard | nucleus | 30.48 | 31.78 |
| PGSC0003DMT400032622 | Potato | nucleus | 27.88 | 31.51 |
| KRH57258 | Soybean | nucleus | 29.74 | 31.5 |
| Solyc08g007830.1.1 | Tomato | nucleus | 26.39 | 31.0 |
| PGSC0003DMT400032621 | Potato | nucleus | 27.88 | 30.74 |
| Solyc08g007820.1.1 | Tomato | nucleus | 27.51 | 30.33 |
| KRH03987 | Soybean | nucleus | 28.25 | 29.8 |
| Bra010460.1-P | Field mustard | nucleus | 30.11 | 29.45 |
| PGSC0003DMT400032623 | Potato | nucleus | 26.77 | 28.92 |
| Bra010463.1-P | Field mustard | nucleus | 23.42 | 28.12 |
| KRH38616 | Soybean | plastid | 29.37 | 24.16 |
| PGSC0003DMT400006896 | Potato | cytosol | 11.9 | 23.88 |
| PGSC0003DMT400090651 | Potato | nucleus | 29.0 | 23.71 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5A01G310100 | EnsemblPlants:TraesCS5A01G310100.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:522082625..522083701
Molecular Weight (calculated)
28743.9 Da
IEP (calculated)
8.639
GRAVY (calculated)
0.191
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVADIASPS GQQEQGHRTV SSEPPKRPAG RTKFHETRHP LYRGVRRRGR VGQWVCEVRV PGIKGSRLWL GTFNTAEMAA RAHDAAVLAL SGRAACLNFA
101: DSAWRMLPVL AAGSFGFGSA SEIKAAVAVA VVAFLRKQIV LPVAVAVVAL QQKQVPIAVA VVALQQKQVP VAVAVVALQK LPVPVAVAVV ALQQQQIILP
201: VACLAPEFYM SSGDLLELDE EQWFGGMEAG SYYASLAQGM LVAPPDERAR PESGEQSGVQ TPLWSCLFD
101: DSAWRMLPVL AAGSFGFGSA SEIKAAVAVA VVAFLRKQIV LPVAVAVVAL QQKQVPIAVA VVALQQKQVP VAVAVVALQK LPVPVAVAVV ALQQQQIILP
201: VACLAPEFYM SSGDLLELDE EQWFGGMEAG SYYASLAQGM LVAPPDERAR PESGEQSGVQ TPLWSCLFD
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.