Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G318400.1 | Wheat | nucleus | 95.8 | 95.4 |
| TraesCS5B01G312100.1 | Wheat | nucleus, plastid | 94.96 | 94.56 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 86.97 | 77.24 |
| TraesCS5A01G311700.1 | Wheat | nucleus | 71.85 | 73.39 |
| TraesCS5A01G310000.1 | Wheat | plastid | 66.39 | 63.97 |
| TraesCS5A01G311100.1 | Wheat | nucleus | 60.08 | 61.11 |
| TraesCS5A01G311800.1 | Wheat | plastid | 60.08 | 58.61 |
| TraesCS6A01G186400.1 | Wheat | plastid | 57.56 | 57.81 |
| TraesCS5A01G311900.1 | Wheat | nucleus | 57.98 | 57.74 |
| TraesCS6A01G381200.1 | Wheat | plastid | 58.82 | 57.14 |
| Os09t0522100-00 | Rice | nucleus | 58.4 | 56.5 |
| TraesCS6A01G381000.1 | Wheat | nucleus | 58.4 | 56.5 |
| TraesCS5A01G311600.1 | Wheat | nucleus | 57.98 | 56.33 |
| TraesCS5A01G310900.1 | Wheat | mitochondrion | 41.18 | 55.68 |
| Zm00001d021205_P001 | Maize | plastid | 55.04 | 53.25 |
| Zm00001d006169_P001 | Maize | plastid | 55.46 | 50.0 |
| EER99211 | Sorghum | plastid | 55.88 | 48.36 |
| TraesCS5A01G312000.1 | Wheat | plastid | 46.64 | 45.87 |
| TraesCS5A01G310200.1 | Wheat | nucleus | 39.92 | 44.81 |
| TraesCS5A01G311300.1 | Wheat | nucleus | 38.24 | 42.92 |
| TraesCS5A01G310700.1 | Wheat | nucleus | 39.08 | 41.89 |
| Solyc03g026270.1.1 | Tomato | nucleus | 35.71 | 41.46 |
| TraesCS5A01G311000.1 | Wheat | nucleus | 37.82 | 40.91 |
| TraesCS5A01G310800.1 | Wheat | nucleus | 36.97 | 40.74 |
| Solyc03g026280.2.1 | Tomato | nucleus | 35.71 | 40.48 |
| TraesCS5A01G310400.1 | Wheat | nucleus | 39.08 | 40.43 |
| PGSC0003DMT400037122 | Potato | nucleus | 36.55 | 40.09 |
| TraesCS5A01G310600.1 | Wheat | nucleus | 37.4 | 39.56 |
| AT1G63030.2 | Thale cress | nucleus | 29.83 | 39.23 |
| TraesCS4A01G433300.1 | Wheat | nucleus | 35.29 | 38.89 |
| CDY49205 | Canola | nucleus | 29.83 | 38.38 |
| Bra027612.1-P | Field mustard | nucleus | 29.83 | 38.38 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 34.87 | 38.25 |
| Solyc03g124110.1.1 | Tomato | nucleus | 35.29 | 38.18 |
| TraesCS7A01G057800.1 | Wheat | nucleus, plastid | 33.61 | 38.1 |
| CDY70584 | Canola | nucleus | 34.03 | 37.85 |
| Bra019162.1-P | Field mustard | nucleus | 34.03 | 37.85 |
| CDX92710 | Canola | nucleus | 34.03 | 37.67 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 34.45 | 37.61 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.93 | 37.44 |
| CDY66018 | Canola | nucleus | 33.19 | 36.92 |
| CDX84868 | Canola | nucleus | 33.19 | 36.92 |
| Bra022770.1-P | Field mustard | nucleus | 33.19 | 36.92 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.91 | 36.89 |
| TraesCS4A01G433200.1 | Wheat | nucleus | 35.29 | 36.84 |
| PGSC0003DMT400010876 | Potato | nucleus | 31.93 | 36.72 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 33.61 | 36.7 |
| CDY52356 | Canola | nucleus | 33.19 | 36.41 |
| CDY52360 | Canola | nucleus | 33.61 | 36.2 |
| AT4G25490.1 | Thale cress | nucleus | 32.35 | 36.15 |
| KRH35383 | Soybean | nucleus | 31.09 | 36.1 |
| PGSC0003DMT400037120 | Potato | nucleus | 35.71 | 36.02 |
| TraesCS7A01G057700.1 | Wheat | nucleus | 34.03 | 36.0 |
| CDY16016 | Canola | nucleus | 30.25 | 35.82 |
| CDY57075 | Canola | nucleus | 31.09 | 35.75 |
| KRG91437 | Soybean | nucleus | 31.09 | 35.75 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 35.29 | 35.74 |
| PGSC0003DMT400032622 | Potato | nucleus | 35.71 | 35.71 |
| AT4G25480.1 | Thale cress | nucleus | 32.35 | 35.65 |
| CDY65499 | Canola | nucleus | 32.35 | 35.65 |
| Bra016763.1-P | Field mustard | nucleus | 30.25 | 35.64 |
| CDY71145 | Canola | nucleus | 30.25 | 35.64 |
| Bra019777.1-P | Field mustard | nucleus | 30.67 | 35.44 |
| Bra026963.1-P | Field mustard | nucleus | 30.25 | 35.12 |
| CDY26574 | Canola | nucleus | 30.25 | 35.12 |
| Bra028290.1-P | Field mustard | nucleus | 32.35 | 35.0 |
| CDY00510 | Canola | nucleus | 32.35 | 35.0 |
| AT1G12610.1 | Thale cress | nucleus | 30.67 | 34.93 |
| PGSC0003DMT400032621 | Potato | nucleus | 35.71 | 34.84 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.71 | 34.84 |
| AT5G51990.1 | Thale cress | nucleus | 32.77 | 34.82 |
| AT4G25470.1 | Thale cress | nucleus | 31.51 | 34.72 |
| CDY31270 | Canola | nucleus | 29.41 | 34.65 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.91 | 34.62 |
| CDY31925 | Canola | nucleus | 31.93 | 34.55 |
| TraesCS5A01G310100.1 | Wheat | nucleus | 38.66 | 34.2 |
| PGSC0003DMT400037121 | Potato | nucleus | 36.97 | 34.11 |
| TraesCS5A01G310500.1 | Wheat | nucleus, plastid | 38.24 | 33.09 |
| KRH09144 | Soybean | nucleus | 31.51 | 32.47 |
| Solyc08g007830.1.1 | Tomato | nucleus | 31.09 | 32.31 |
| KRH03987 | Soybean | nucleus | 34.45 | 32.16 |
| KRH77483 | Soybean | nucleus | 30.25 | 31.86 |
| KRH57258 | Soybean | nucleus | 33.61 | 31.5 |
| Bra010461.1-P | Field mustard | nucleus | 34.03 | 31.4 |
| CDY52358 | Canola | nucleus | 24.37 | 30.69 |
| CDY66013 | Canola | nucleus | 24.37 | 30.37 |
| PGSC0003DMT400032623 | Potato | nucleus | 31.51 | 30.12 |
| Bra010460.1-P | Field mustard | nucleus | 33.19 | 28.73 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.55 | 27.61 |
| Bra010463.1-P | Field mustard | nucleus | 24.79 | 26.34 |
| PGSC0003DMT400090651 | Potato | nucleus | 33.61 | 24.32 |
| KRH38616 | Soybean | plastid | 31.93 | 23.24 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF5 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:TraesCS5A01G311500 | EnsemblPlants:TraesCS5A01G311500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:+:523136705..523137421
Molecular Weight (calculated)
25215.4 Da
IEP (calculated)
5.302
GRAVY (calculated)
-0.276
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMTGSDQQR SSPSSPSSSS HLKRPAGRTK FKETRHPVYR GVRRRGSAGR WVCEVRVPGK RGERLWLGTH LTAEAAARAH DAAMLGLIGP STPCLNFVDS
101: AWLLAVPSAL SDFADVRRAA LSAVADFQRR EATSGAATTS LAATVPVDDG SCSQSAQSSM ENTGSSWTSS LPSGDGMFAV PATLGCNMFE LDMSGEMDLD
201: TYYAYFAEGL LLEPPQPPVA GACWDTEGGG ADAALWSY
101: AWLLAVPSAL SDFADVRRAA LSAVADFQRR EATSGAATTS LAATVPVDDG SCSQSAQSSM ENTGSSWTSS LPSGDGMFAV PATLGCNMFE LDMSGEMDLD
201: TYYAYFAEGL LLEPPQPPVA GACWDTEGGG ADAALWSY
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.