Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G318400.1 | Wheat | nucleus | 95.82 | 95.82 |
| TraesCS5A01G311500.1 | Wheat | nucleus, plastid | 94.56 | 94.96 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 87.03 | 77.61 |
| TraesCS5B01G312300.1 | Wheat | nucleus | 72.38 | 74.25 |
| TraesCS5B01G311900.1 | Wheat | plastid | 59.83 | 61.11 |
| TraesCS5B01G312800.1 | Wheat | plastid | 58.58 | 58.33 |
| TraesCS5B01G312700.1 | Wheat | nucleus | 59.0 | 58.02 |
| TraesCS6B01G218000.1 | Wheat | plastid | 59.0 | 57.79 |
| TraesCS6B01G420100.1 | Wheat | nucleus | 58.58 | 57.14 |
| TraesCS5B01G312200.1 | Wheat | nucleus | 58.58 | 57.14 |
| Os09t0522100-00 | Rice | nucleus | 57.74 | 56.1 |
| TraesCS5B01G312900.1 | Wheat | nucleus | 56.9 | 55.74 |
| Zm00001d021205_P001 | Maize | plastid | 55.23 | 53.66 |
| Zm00001d006169_P001 | Maize | plastid | 56.07 | 50.76 |
| EER99211 | Sorghum | plastid | 56.07 | 48.73 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 47.28 | 47.88 |
| TraesCS5B01G310900.1 | Wheat | nucleus | 32.22 | 44.0 |
| TraesCS5B01G311500.1 | Wheat | nucleus | 38.08 | 42.92 |
| TraesCS5B01G311400.1 | Wheat | nucleus | 39.75 | 42.79 |
| TraesCS1B01G335100.1 | Wheat | nucleus | 39.75 | 42.79 |
| TraesCS5B01G312000.1 | Wheat | nucleus | 38.08 | 42.52 |
| TraesCS5B01G311700.1 | Wheat | nucleus | 38.91 | 42.27 |
| TraesCS5B01G311600.1 | Wheat | nucleus | 35.15 | 41.58 |
| Solyc03g026270.1.1 | Tomato | nucleus | 35.15 | 40.98 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 31.8 | 40.0 |
| PGSC0003DMT400037122 | Potato | nucleus | 35.98 | 39.63 |
| Solyc03g026280.2.1 | Tomato | nucleus | 34.73 | 39.52 |
| TraesCS5B01G311200.1 | Wheat | nucleus | 37.24 | 39.21 |
| AT1G63030.2 | Thale cress | nucleus | 29.29 | 38.67 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 34.73 | 38.25 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 34.73 | 38.07 |
| CDY70584 | Canola | nucleus | 33.89 | 37.85 |
| Bra019162.1-P | Field mustard | nucleus | 33.89 | 37.85 |
| Bra027612.1-P | Field mustard | nucleus | 29.29 | 37.84 |
| CDY49205 | Canola | nucleus | 29.29 | 37.84 |
| Solyc03g124110.1.1 | Tomato | nucleus | 34.73 | 37.73 |
| CDX92710 | Canola | nucleus | 33.89 | 37.67 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.8 | 37.44 |
| CDX84868 | Canola | nucleus | 33.05 | 36.92 |
| CDY66018 | Canola | nucleus | 33.05 | 36.92 |
| Bra022770.1-P | Field mustard | nucleus | 33.05 | 36.92 |
| PGSC0003DMT400010876 | Potato | nucleus | 31.8 | 36.72 |
| CDY52356 | Canola | nucleus | 33.05 | 36.41 |
| CDY52360 | Canola | nucleus | 33.47 | 36.2 |
| AT4G25490.1 | Thale cress | nucleus | 32.22 | 36.15 |
| KRH35383 | Soybean | nucleus | 30.96 | 36.1 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.41 | 36.07 |
| CDY16016 | Canola | nucleus | 30.13 | 35.82 |
| CDY57075 | Canola | nucleus | 30.96 | 35.75 |
| KRG91437 | Soybean | nucleus | 30.96 | 35.75 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 35.15 | 35.74 |
| PGSC0003DMT400032622 | Potato | nucleus | 35.56 | 35.71 |
| AT4G25480.1 | Thale cress | nucleus | 32.22 | 35.65 |
| CDY65499 | Canola | nucleus | 32.22 | 35.65 |
| Bra016763.1-P | Field mustard | nucleus | 30.13 | 35.64 |
| CDY71145 | Canola | nucleus | 30.13 | 35.64 |
| PGSC0003DMT400037120 | Potato | nucleus | 35.15 | 35.59 |
| Bra019777.1-P | Field mustard | nucleus | 30.54 | 35.44 |
| Bra026963.1-P | Field mustard | nucleus | 30.13 | 35.12 |
| CDY26574 | Canola | nucleus | 30.13 | 35.12 |
| Bra028290.1-P | Field mustard | nucleus | 32.22 | 35.0 |
| CDY00510 | Canola | nucleus | 32.22 | 35.0 |
| AT1G12610.1 | Thale cress | nucleus | 30.54 | 34.93 |
| PGSC0003DMT400032621 | Potato | nucleus | 35.56 | 34.84 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.56 | 34.84 |
| AT5G51990.1 | Thale cress | nucleus | 32.64 | 34.82 |
| AT4G25470.1 | Thale cress | nucleus | 31.38 | 34.72 |
| TraesCS5B01G310800.1 | Wheat | nucleus | 38.91 | 34.57 |
| CDY31925 | Canola | nucleus | 31.8 | 34.55 |
| CDY31270 | Canola | nucleus | 28.87 | 34.16 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.41 | 33.85 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 30.13 | 33.8 |
| PGSC0003DMT400037121 | Potato | nucleus | 35.98 | 33.33 |
| KRH09144 | Soybean | nucleus | 31.38 | 32.47 |
| Solyc08g007830.1.1 | Tomato | nucleus | 30.96 | 32.31 |
| KRH03987 | Soybean | nucleus | 34.31 | 32.16 |
| KRH77483 | Soybean | nucleus | 30.13 | 31.86 |
| Bra010461.1-P | Field mustard | nucleus | 33.89 | 31.4 |
| KRH57258 | Soybean | nucleus | 33.05 | 31.1 |
| CDY52358 | Canola | nucleus | 24.27 | 30.69 |
| CDY66013 | Canola | nucleus | 24.27 | 30.37 |
| PGSC0003DMT400032623 | Potato | nucleus | 31.38 | 30.12 |
| TraesCS5B01G311300.1 | Wheat | nucleus | 35.56 | 29.31 |
| Bra010460.1-P | Field mustard | nucleus | 33.05 | 28.73 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.48 | 27.61 |
| Bra010463.1-P | Field mustard | nucleus | 24.69 | 26.34 |
| PGSC0003DMT400090651 | Potato | nucleus | 33.47 | 24.32 |
| KRH38616 | Soybean | plastid | 31.8 | 23.24 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF5 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:TraesCS5B01G312100 | EnsemblPlants:TraesCS5B01G312100.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:+:493674057..493674776
Molecular Weight (calculated)
25528.7 Da
IEP (calculated)
4.911
GRAVY (calculated)
-0.329
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMTGSDQQR SSPSSPSSSS HLKRPAGRTK FKETRHPVYR GVRRRGSAGR WVCEVRVPGK RGERLWLGTH LTAEAAARAY DAAMLCLIGP STQCLNFADS
101: AWLLAVPSAL PDFADVRRAA LSAVADFQRR EAASGAATRS LDATVPVDDG TCSQSAQSSM ENTGSSWTSS SLPSGNGMFE VPATLGCDMF ELDMSGEMDL
201: DTYYAYFAEG LLLEPPQPPV AGACWDTEGG GADAALWSY
101: AWLLAVPSAL PDFADVRRAA LSAVADFQRR EAASGAATRS LDATVPVDDG TCSQSAQSSM ENTGSSWTSS SLPSGNGMFE VPATLGCDMF ELDMSGEMDL
201: DTYYAYFAEG LLLEPPQPPV AGACWDTEGG GADAALWSY
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.