Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G317300.1 | Wheat | nucleus | 96.48 | 95.22 |
| TraesCS5A01G310400.1 | Wheat | nucleus | 95.59 | 94.35 |
| TraesCS5B01G311700.1 | Wheat | nucleus | 81.5 | 84.09 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 80.18 | 81.25 |
| TraesCS5B01G310900.1 | Wheat | nucleus | 48.46 | 62.86 |
| TraesCS5B01G311500.1 | Wheat | nucleus | 56.83 | 60.85 |
| TraesCS5B01G311400.1 | Wheat | nucleus | 59.03 | 60.36 |
| TraesCS1B01G335100.1 | Wheat | nucleus | 58.59 | 59.91 |
| TraesCS5B01G311600.1 | Wheat | nucleus | 52.86 | 59.41 |
| TraesCS5B01G312000.1 | Wheat | nucleus | 52.42 | 55.61 |
| TraesCS5B01G310800.1 | Wheat | nucleus | 55.51 | 46.84 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 41.85 | 43.78 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 40.53 | 42.2 |
| KRG91437 | Soybean | nucleus | 37.44 | 41.06 |
| AT1G63030.2 | Thale cress | nucleus | 32.6 | 40.88 |
| KRH35383 | Soybean | nucleus | 36.56 | 40.49 |
| Solyc03g026270.1.1 | Tomato | nucleus | 36.12 | 40.0 |
| CDY49205 | Canola | nucleus | 32.6 | 40.0 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 33.48 | 40.0 |
| Bra027612.1-P | Field mustard | nucleus | 32.6 | 40.0 |
| CDY16016 | Canola | nucleus | 35.24 | 39.8 |
| Bra016763.1-P | Field mustard | nucleus | 35.24 | 39.6 |
| CDY71145 | Canola | nucleus | 35.24 | 39.6 |
| CDX92710 | Canola | nucleus | 37.0 | 39.07 |
| TraesCS5B01G312300.1 | Wheat | nucleus | 40.09 | 39.06 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.12 | 39.05 |
| CDY26574 | Canola | nucleus | 35.24 | 39.02 |
| Bra026963.1-P | Field mustard | nucleus | 35.24 | 39.02 |
| AT4G25490.1 | Thale cress | nucleus | 36.56 | 38.97 |
| TraesCS5B01G311900.1 | Wheat | plastid | 40.09 | 38.89 |
| AT4G25480.1 | Thale cress | nucleus | 37.0 | 38.89 |
| Bra019777.1-P | Field mustard | nucleus | 35.24 | 38.84 |
| PGSC0003DMT400037122 | Potato | nucleus | 37.0 | 38.71 |
| CDY57075 | Canola | nucleus | 35.24 | 38.65 |
| TraesCS5B01G311300.1 | Wheat | nucleus | 49.34 | 38.62 |
| CDY31270 | Canola | nucleus | 34.36 | 38.61 |
| TraesCS6B01G218000.1 | Wheat | plastid | 41.41 | 38.52 |
| AT4G25470.1 | Thale cress | nucleus | 36.56 | 38.43 |
| CDY70584 | Canola | nucleus | 36.12 | 38.32 |
| Bra019162.1-P | Field mustard | nucleus | 36.12 | 38.32 |
| Bra028290.1-P | Field mustard | nucleus | 37.0 | 38.18 |
| CDY00510 | Canola | nucleus | 37.0 | 38.18 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 39.21 | 37.87 |
| CDY52356 | Canola | nucleus | 36.12 | 37.79 |
| TraesCS6B01G420100.1 | Wheat | nucleus | 40.53 | 37.55 |
| CDY66018 | Canola | nucleus | 35.24 | 37.38 |
| Bra022770.1-P | Field mustard | nucleus | 35.24 | 37.38 |
| CDX84868 | Canola | nucleus | 35.24 | 37.38 |
| CDY31925 | Canola | nucleus | 36.12 | 37.27 |
| TraesCS5B01G312100.1 | Wheat | nucleus, plastid | 39.21 | 37.24 |
| PGSC0003DMT400010876 | Potato | nucleus | 33.92 | 37.2 |
| CDY52360 | Canola | nucleus | 36.12 | 37.1 |
| CDY65499 | Canola | nucleus | 35.24 | 37.04 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 19.82 | 36.89 |
| AT1G12610.1 | Thale cress | nucleus | 33.92 | 36.84 |
| Solyc03g124110.1.1 | Tomato | nucleus | 35.68 | 36.82 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 34.36 | 36.62 |
| AT5G51990.1 | Thale cress | nucleus | 36.12 | 36.61 |
| Solyc12g056430.1.1 | Tomato | nucleus | 32.6 | 36.45 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 37.44 | 36.02 |
| KRH77483 | Soybean | nucleus | 35.68 | 35.84 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 52.42 | 35.52 |
| TraesCS5B01G312700.1 | Wheat | nucleus | 37.89 | 35.39 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 20.26 | 35.38 |
| TraesCS5B01G312200.1 | Wheat | nucleus | 37.89 | 35.1 |
| KRH09144 | Soybean | nucleus | 35.68 | 35.06 |
| TraesCS5B01G312800.1 | Wheat | plastid | 37.0 | 35.0 |
| PGSC0003DMT400032622 | Potato | nucleus | 36.56 | 34.87 |
| PGSC0003DMT400037120 | Potato | nucleus | 36.12 | 34.75 |
| TraesCS5B01G312900.1 | Wheat | nucleus | 36.12 | 33.61 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.68 | 33.2 |
| Solyc08g007830.1.1 | Tomato | nucleus | 33.48 | 33.19 |
| CDY66013 | Canola | nucleus | 27.75 | 32.98 |
| PGSC0003DMT400032621 | Potato | nucleus | 35.24 | 32.79 |
| KRH57258 | Soybean | nucleus | 36.12 | 32.28 |
| PGSC0003DMT400037121 | Potato | nucleus | 36.56 | 32.17 |
| Bra010461.1-P | Field mustard | nucleus | 36.12 | 31.78 |
| KRH03987 | Soybean | nucleus | 35.68 | 31.76 |
| CDY52358 | Canola | nucleus | 26.43 | 31.75 |
| PGSC0003DMT400032623 | Potato | nucleus | 33.04 | 30.12 |
| Bra010460.1-P | Field mustard | nucleus | 36.12 | 29.82 |
| Bra010463.1-P | Field mustard | nucleus | 27.75 | 28.12 |
| PGSC0003DMT400006896 | Potato | cytosol | 16.3 | 27.61 |
| KRH38616 | Soybean | plastid | 37.0 | 25.69 |
| PGSC0003DMT400090651 | Potato | nucleus | 36.12 | 24.92 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:TraesCS5B01G311200 | EnsemblPlants:TraesCS5B01G311200.1 | TIGR:cd00018 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:-:492819504..492820187
Molecular Weight (calculated)
25157.3 Da
IEP (calculated)
4.989
GRAVY (calculated)
-0.518
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTVGAWPHF EGQEYMTVWP EEEYRTVWSE PPKRRAGRNK LQETRHPVYR GVRRRGREGQ WVWVCELRVP AAGSRVYSRI WLGTFADPEM AARAHDSAAL
101: ALSGRDACLN FADSAWRMMP VHAAGSFKMA AAQEIKDAVA VALKAFQELQ CPADVSKAPS STSEESAPSI TSSDLSGLDD EHWIGGMDAG SYYANLAQGM
201: LMEPPAAGGW REDREQDDGV GTSLWTY
101: ALSGRDACLN FADSAWRMMP VHAAGSFKMA AAQEIKDAVA VALKAFQELQ CPADVSKAPS STSEESAPSI TSSDLSGLDD EHWIGGMDAG SYYANLAQGM
201: LMEPPAAGGW REDREQDDGV GTSLWTY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.