Factsheet for TraesCS5B01G312700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G311800.1	Wheat	plastid	91.36	90.98
TraesCS5B01G312800.1	Wheat	plastid	78.19	79.17
TraesCS5B01G312900.1	Wheat	nucleus	77.78	77.46
HORVU5Hr1G080420.1	Barley	nucleus, plastid	81.48	69.72
TraesCS5B01G312300.1	Wheat	nucleus	60.49	63.09
TraesCS6B01G218000.1	Wheat	plastid	61.32	61.07
TraesCS6B01G420100.1	Wheat	nucleus	60.08	59.59
TraesCS5B01G312100.1	Wheat	nucleus, plastid	58.02	59.0
Os09t0522100-00	Rice	nucleus	58.44	57.72
TraesCS5B01G311900.1	Wheat	plastid	54.73	56.84
Zm00001d021205_P001	Maize	plastid	56.79	56.1
Zm00001d006169_P001	Maize	plastid	59.26	54.55
TraesCS5B01G312200.1	Wheat	nucleus	52.67	52.24
EER99211	Sorghum	plastid	58.44	51.64
TraesCS5B01G313000.1	Wheat	nucleus	48.97	50.42
TraesCS5B01G310900.1	Wheat	nucleus	32.1	44.57
TraesCS5B01G311500.1	Wheat	nucleus	38.68	44.34
TraesCS5B01G312000.1	Wheat	nucleus	38.68	43.93
Solyc03g026270.1.1	Tomato	nucleus	37.04	43.9
TraesCS5B01G311600.1	Wheat	nucleus	36.21	43.56
TraesCS5B01G311400.1	Wheat	nucleus	39.51	43.24
PGSC0003DMT400037122	Potato	nucleus	38.27	42.86
TraesCS1B01G335100.1	Wheat	nucleus	39.09	42.79
Solyc03g026280.2.1	Tomato	nucleus	36.63	42.38
TraesCS5B01G311700.1	Wheat	nucleus	37.04	40.91
VIT_16s0100g00380.t01	Wine grape	nucleus	36.63	40.83
AT1G63030.2	Thale cress	nucleus	30.04	40.33
Bra027612.1-P	Field mustard	nucleus	30.45	40.0
CDY49205	Canola	nucleus	30.45	40.0
KRG91437	Soybean	nucleus	33.33	39.13
Solyc03g124110.1.1	Tomato	nucleus	35.39	39.09
KRH35383	Soybean	nucleus	32.92	39.02
AT4G25490.1	Thale cress	nucleus	34.16	38.97
CDY70584	Canola	nucleus	34.16	38.78
Bra019162.1-P	Field mustard	nucleus	34.16	38.78
CDX84868	Canola	nucleus	33.74	38.32
Bra022770.1-P	Field mustard	nucleus	33.74	38.32
TraesCS6B01G268100.1	Wheat	nucleus	34.16	38.25
CDX92710	Canola	nucleus	33.74	38.14
AT4G25480.1	Thale cress	nucleus	33.74	37.96
TraesCS2B01G002700.1	Wheat	nucleus, plastid	29.63	37.89
TraesCS5B01G311200.1	Wheat	nucleus	35.39	37.89
VIT_02s0025g04460.t01	Wine grape	nucleus	36.63	37.87
CDY66018	Canola	nucleus	33.33	37.85
CDY52356	Canola	nucleus	33.74	37.79
PGSC0003DMT400037119	Potato	mitochondrion	18.93	37.7
Solyc12g056430.1.1	Tomato	nucleus	31.28	37.44
Bra028290.1-P	Field mustard	nucleus	33.74	37.27
CDY00510	Canola	nucleus	33.74	37.27
Bra016763.1-P	Field mustard	nucleus	30.86	37.13
CDY71145	Canola	nucleus	30.86	37.13
CDY52360	Canola	nucleus	33.74	37.1
AT4G25470.1	Thale cress	nucleus	32.92	37.04
Bra019777.1-P	Field mustard	nucleus	31.28	36.89
CDY31925	Canola	nucleus	33.33	36.82
CDY16016	Canola	nucleus	30.45	36.82
TraesCS5B01G310800.1	Wheat	nucleus	40.74	36.8
CDY57075	Canola	nucleus	31.28	36.72
PGSC0003DMT400010876	Potato	nucleus	31.28	36.72
PGSC0003DMT400037120	Potato	nucleus	35.39	36.44
CDY26574	Canola	nucleus	30.45	36.1
Bra026963.1-P	Field mustard	nucleus	30.45	36.1
PGSC0003DMT400037121	Potato	nucleus	37.86	35.66
CDY31270	Canola	nucleus	29.63	35.64
PGSC0003DMT400032622	Potato	nucleus	34.57	35.29
AT5G51990.1	Thale cress	nucleus	32.51	35.27
TraesCS2B01G417500.1	Wheat	nucleus	30.86	35.21
KRH09144	Soybean	nucleus	33.33	35.06
AT1G12610.1	Thale cress	nucleus	30.04	34.93
KRH57258	Soybean	nucleus	36.21	34.65
KRH77483	Soybean	nucleus	32.1	34.51
CDY65499	Canola	nucleus	30.45	34.26
Solyc08g007820.1.1	Tomato	nucleus	34.16	34.02
PGSC0003DMT400032621	Potato	nucleus	33.74	33.61
KRH03987	Soybean	nucleus	34.57	32.94
Solyc08g007830.1.1	Tomato	nucleus	30.45	32.31
PGSC0003DMT400037118	Potato	mitochondrion	17.28	32.31
Bra010461.1-P	Field mustard	nucleus	33.33	31.4
PGSC0003DMT400032623	Potato	nucleus	30.45	29.72
CDY52358	Canola	nucleus	23.05	29.63
Bra010460.1-P	Field mustard	nucleus	33.33	29.45
CDY66013	Canola	nucleus	23.05	29.32
TraesCS5B01G311300.1	Wheat	nucleus	34.57	28.97
Bra010463.1-P	Field mustard	nucleus	25.51	27.68
PGSC0003DMT400006896	Potato	cytosol	14.4	26.12
PGSC0003DMT400090651	Potato	nucleus	33.74	24.92
KRH38616	Soybean	plastid	33.33	24.77

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF5	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5B01G312700	EnsemblPlants:TraesCS5B01G312700.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:494033087..494033818

Molecular Weight (calculated)

25755.7 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.337

Length

243 amino acids

Sequence
(BLAST)

001: MDMGLEVSSS SPSSSSVSSS PEHAAGRASL AKRPAGRTKF RETRHPVYRG VRRRGNAERW VCEVRVPGKR GARLWLGTYD TAELAARAND AAMLALGGRS
101: AACLNFADSA WLLAVPSALS DLGDVRRAAV EAVANLQRRK AGNGSLTATV TEEASCDAPE ESSSESDSAG SSETSEPSAD REFEVPVAVD TDMFGLDLFP
201: EMDLCSYYAS LAEALLVDPP ARVTTTDTYW DNGDGGADVA LWS

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.