Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 84.04 | 82.11 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 82.63 | 81.11 |
| Os04t0572400-00 | Rice | nucleus | 73.24 | 71.23 |
| Zm00001d002618_P001 | Maize | nucleus | 68.08 | 65.32 |
| EES11288 | Sorghum | nucleus | 66.67 | 62.56 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 63.38 | 62.21 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 45.07 | 46.6 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 37.56 | 42.11 |
| PGSC0003DMT400037122 | Potato | nucleus | 41.78 | 41.01 |
| Solyc03g026270.1.1 | Tomato | nucleus | 38.97 | 40.49 |
| KRH35383 | Soybean | nucleus | 38.5 | 40.0 |
| Bra028290.1-P | Field mustard | nucleus | 41.31 | 40.0 |
| CDY00510 | Canola | nucleus | 41.31 | 40.0 |
| KRG91437 | Soybean | nucleus | 38.5 | 39.61 |
| AT4G25480.1 | Thale cress | nucleus | 39.91 | 39.35 |
| AT4G25470.1 | Thale cress | nucleus | 39.91 | 39.35 |
| Bra019162.1-P | Field mustard | nucleus | 39.44 | 39.25 |
| CDY70584 | Canola | nucleus | 39.44 | 39.25 |
| CDY31925 | Canola | nucleus | 40.38 | 39.09 |
| CDX92710 | Canola | nucleus | 39.44 | 39.07 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 39.91 | 38.99 |
| AT5G51990.1 | Thale cress | nucleus | 40.85 | 38.84 |
| CDY52356 | Canola | nucleus | 39.44 | 38.71 |
| AT1G63030.2 | Thale cress | nucleus | 32.86 | 38.67 |
| AT4G25490.1 | Thale cress | nucleus | 38.5 | 38.5 |
| CDY49205 | Canola | nucleus | 33.33 | 38.38 |
| Bra027612.1-P | Field mustard | nucleus | 33.33 | 38.38 |
| Bra022770.1-P | Field mustard | nucleus | 38.5 | 38.32 |
| CDY66018 | Canola | nucleus | 38.5 | 38.32 |
| CDX84868 | Canola | nucleus | 38.5 | 38.32 |
| TraesCS1B01G335100.1 | Wheat | nucleus | 39.91 | 38.29 |
| TraesCS5B01G311400.1 | Wheat | nucleus | 39.91 | 38.29 |
| Solyc03g026280.2.1 | Tomato | nucleus | 37.56 | 38.1 |
| CDY52360 | Canola | nucleus | 39.44 | 38.01 |
| CDY65499 | Canola | nucleus | 38.5 | 37.96 |
| Solyc03g124110.1.1 | Tomato | nucleus | 38.97 | 37.73 |
| TraesCS5B01G310900.1 | Wheat | nucleus | 30.99 | 37.71 |
| CDY57075 | Canola | nucleus | 36.62 | 37.68 |
| PGSC0003DMT400010876 | Potato | nucleus | 36.62 | 37.68 |
| Bra016763.1-P | Field mustard | nucleus | 35.68 | 37.62 |
| CDY71145 | Canola | nucleus | 35.68 | 37.62 |
| CDY31270 | Canola | nucleus | 35.68 | 37.62 |
| CDY16016 | Canola | nucleus | 35.21 | 37.31 |
| Bra019777.1-P | Field mustard | nucleus | 35.68 | 36.89 |
| TraesCS5B01G311700.1 | Wheat | nucleus | 38.03 | 36.82 |
| TraesCS5B01G311500.1 | Wheat | nucleus | 36.62 | 36.79 |
| TraesCS5B01G311600.1 | Wheat | nucleus | 34.74 | 36.63 |
| CDY26574 | Canola | nucleus | 35.21 | 36.59 |
| Bra026963.1-P | Field mustard | nucleus | 35.21 | 36.59 |
| PGSC0003DMT400037120 | Potato | nucleus | 40.38 | 36.44 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 39.91 | 36.17 |
| Solyc12g056430.1.1 | Tomato | nucleus | 34.27 | 35.96 |
| TraesCS5B01G312000.1 | Wheat | nucleus | 35.68 | 35.51 |
| AT1G12610.1 | Thale cress | nucleus | 34.74 | 35.41 |
| PGSC0003DMT400032622 | Potato | nucleus | 39.44 | 35.29 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.19 | 35.25 |
| Solyc08g007820.1.1 | Tomato | nucleus | 40.38 | 35.25 |
| PGSC0003DMT400032621 | Potato | nucleus | 39.91 | 34.84 |
| KRH09144 | Soybean | nucleus | 37.56 | 34.63 |
| KRH77483 | Soybean | nucleus | 36.62 | 34.51 |
| TraesCS5B01G311200.1 | Wheat | nucleus | 36.62 | 34.36 |
| TraesCS5B01G312300.1 | Wheat | nucleus | 37.09 | 33.91 |
| TraesCS6B01G420100.1 | Wheat | nucleus | 38.97 | 33.88 |
| Solyc08g007830.1.1 | Tomato | nucleus | 36.15 | 33.62 |
| CDY66013 | Canola | nucleus | 30.05 | 33.51 |
| PGSC0003DMT400037121 | Potato | nucleus | 40.38 | 33.33 |
| CDY52358 | Canola | nucleus | 29.11 | 32.8 |
| TraesCS6B01G218000.1 | Wheat | plastid | 37.56 | 32.79 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 36.15 | 32.63 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.72 | 32.31 |
| PGSC0003DMT400032623 | Potato | nucleus | 37.56 | 32.13 |
| TraesCS5B01G311900.1 | Wheat | plastid | 35.21 | 32.05 |
| Bra010461.1-P | Field mustard | nucleus | 37.56 | 31.01 |
| KRH03987 | Soybean | nucleus | 37.09 | 30.98 |
| TraesCS5B01G312700.1 | Wheat | nucleus | 35.21 | 30.86 |
| TraesCS5B01G312800.1 | Wheat | plastid | 34.74 | 30.83 |
| KRH57258 | Soybean | nucleus | 36.62 | 30.71 |
| Bra010460.1-P | Field mustard | nucleus | 39.44 | 30.55 |
| TraesCS5B01G310800.1 | Wheat | nucleus | 38.5 | 30.48 |
| TraesCS5B01G312900.1 | Wheat | nucleus | 34.74 | 30.33 |
| TraesCS5B01G312100.1 | Wheat | nucleus, plastid | 33.8 | 30.13 |
| TraesCS5B01G312200.1 | Wheat | nucleus | 34.27 | 29.8 |
| Bra010463.1-P | Field mustard | nucleus | 30.52 | 29.02 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 42.72 | 28.62 |
| TraesCS5B01G311300.1 | Wheat | nucleus | 35.68 | 26.21 |
| KRH38616 | Soybean | plastid | 38.97 | 25.38 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.96 | 25.37 |
| PGSC0003DMT400090651 | Potato | nucleus | 35.21 | 22.8 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF21 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS2B01G417500 | EnsemblPlants:TraesCS2B01G417500.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:-:597002268..597002909
Molecular Weight (calculated)
23252.6 Da
IEP (calculated)
9.428
GRAVY (calculated)
-0.557
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MERAYCGSGY SSSGTKSPAA GDREEGTYMT VSSAPPKRRT GRTKVRETRH PVYKGVRSRN PGRWVCELRE PHGKQRLWLG TFDTAEMAAR AHDVAALALR
101: GRAACLNFAD SPRTLRVPPQ GGGHDEIRRA AVEAAELFRP APGQRNAATE VPAASPVDAG NAELVANSPY YLMDGLEFEM QSYLDMAHGM LIDVDRGGLR
201: LRGQPVELLM ART
101: GRAACLNFAD SPRTLRVPPQ GGGHDEIRRA AVEAAELFRP APGQRNAATE VPAASPVDAG NAELVANSPY YLMDGLEFEM QSYLDMAHGM LIDVDRGGLR
201: LRGQPVELLM ART
001: MENDDITVAE MKPKKRAGRR IFKETRHPIY RGVRRRDGDK WVCEVREPIH QRRVWLGTYP TADMAARAHD VAVLALRGRS ACLNFSDSAW RLPVPASTDP
101: DTIRRTAAEA AEMFRPPEFS TGITVLPSAS EFDTSDEGVA GMMMRLAEEP LMSPPRSYID MNTSVYVDEE MCYEDLSLWS Y
101: DTIRRTAAEA AEMFRPPEFS TGITVLPSAS EFDTSDEGVA GMMMRLAEEP LMSPPRSYID MNTSVYVDEE MCYEDLSLWS Y
Arabidopsis Description
DREB1EDehydration-responsive element-binding protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9SGJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.