Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013265_P003 | |
| Zm00001d014175_P004 | |
| Zm00001d034033_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Zm00001d014175_P004 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Zm00001d013265_P003 | AT4G16420.1 | 16603259 |
| AT4G25490.1 | Zm00001d034033_P002 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11288 | Sorghum | nucleus | 88.29 | 86.34 |
| Os04t0572400-00 | Rice | nucleus | 78.38 | 79.45 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 72.97 | 74.65 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 72.97 | 74.31 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 65.32 | 68.08 |
| Zm00001d017592_P001 | Maize | nucleus | 68.47 | 65.8 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 47.3 | 50.97 |
| AT1G63030.2 | Thale cress | nucleus | 39.64 | 48.62 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 46.4 | 47.25 |
| Zm00001d036003_P001 | Maize | nucleus | 48.65 | 46.55 |
| PGSC0003DMT400037122 | Potato | nucleus | 45.5 | 46.54 |
| CDY49205 | Canola | nucleus | 38.74 | 46.49 |
| Bra027612.1-P | Field mustard | nucleus | 38.74 | 46.49 |
| Solyc03g026270.1.1 | Tomato | nucleus | 42.79 | 46.34 |
| CDY16016 | Canola | nucleus | 41.89 | 46.27 |
| AT4G25490.1 | Thale cress | nucleus | 44.14 | 46.01 |
| AT4G25480.1 | Thale cress | nucleus | 44.59 | 45.83 |
| Bra016763.1-P | Field mustard | nucleus | 41.44 | 45.54 |
| CDY71145 | Canola | nucleus | 41.44 | 45.54 |
| Bra019777.1-P | Field mustard | nucleus | 41.89 | 45.15 |
| Bra026963.1-P | Field mustard | nucleus | 41.44 | 44.88 |
| CDY26574 | Canola | nucleus | 41.44 | 44.88 |
| CDY57075 | Canola | nucleus | 41.44 | 44.44 |
| KRG91437 | Soybean | nucleus | 41.44 | 44.44 |
| CDY70584 | Canola | nucleus | 42.79 | 44.39 |
| Bra019162.1-P | Field mustard | nucleus | 42.79 | 44.39 |
| KRH35383 | Soybean | nucleus | 40.99 | 44.39 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 24.32 | 44.26 |
| CDY52356 | Canola | nucleus | 43.24 | 44.24 |
| CDY31270 | Canola | nucleus | 40.09 | 44.06 |
| AT4G25470.1 | Thale cress | nucleus | 42.79 | 43.98 |
| CDX92710 | Canola | nucleus | 42.34 | 43.72 |
| AT1G12610.1 | Thale cress | nucleus | 40.99 | 43.54 |
| CDY65499 | Canola | nucleus | 42.34 | 43.52 |
| CDY52360 | Canola | nucleus | 43.24 | 43.44 |
| Bra028290.1-P | Field mustard | nucleus | 42.79 | 43.18 |
| CDY00510 | Canola | nucleus | 42.79 | 43.18 |
| PGSC0003DMT400010876 | Potato | nucleus | 40.09 | 43.0 |
| Bra022770.1-P | Field mustard | nucleus | 40.99 | 42.52 |
| CDX84868 | Canola | nucleus | 40.99 | 42.52 |
| Solyc03g026280.2.1 | Tomato | nucleus | 40.09 | 42.38 |
| CDY31925 | Canola | nucleus | 41.89 | 42.27 |
| CDY66018 | Canola | nucleus | 40.54 | 42.06 |
| AT5G51990.1 | Thale cress | nucleus | 42.34 | 41.96 |
| Solyc12g056430.1.1 | Tomato | nucleus | 38.29 | 41.87 |
| Solyc03g124110.1.1 | Tomato | nucleus | 41.44 | 41.82 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 24.32 | 41.54 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 43.69 | 41.28 |
| PGSC0003DMT400037120 | Potato | nucleus | 43.69 | 41.1 |
| Zm00001d031728_P001 | Maize | nucleus, plastid | 41.89 | 40.97 |
| Solyc08g007830.1.1 | Tomato | nucleus | 41.89 | 40.61 |
| PGSC0003DMT400032622 | Potato | nucleus | 43.24 | 40.34 |
| PGSC0003DMT400032621 | Potato | nucleus | 44.14 | 40.16 |
| KRH77483 | Soybean | nucleus | 40.54 | 39.82 |
| Solyc08g007820.1.1 | Tomato | nucleus | 43.69 | 39.75 |
| KRH09144 | Soybean | nucleus | 40.99 | 39.39 |
| Zm00001d052732_P001 | Maize | plastid | 39.19 | 39.01 |
| Zm00001d041981_P001 | Maize | nucleus | 42.79 | 38.78 |
| CDY66013 | Canola | nucleus | 33.33 | 38.74 |
| CDY52358 | Canola | nucleus | 32.88 | 38.62 |
| PGSC0003DMT400032623 | Potato | nucleus | 42.79 | 38.15 |
| PGSC0003DMT400037121 | Potato | nucleus | 44.14 | 37.98 |
| Zm00001d021205_P001 | Maize | plastid | 41.44 | 37.4 |
| Zm00001d021208_P001 | Maize | plastid | 37.84 | 36.36 |
| Bra010461.1-P | Field mustard | nucleus | 41.89 | 36.05 |
| Zm00001d021207_P001 | Maize | nucleus | 38.29 | 35.71 |
| Zm00001d006170_P001 | Maize | nucleus | 36.04 | 34.78 |
| KRH57258 | Soybean | nucleus | 39.64 | 34.65 |
| Bra010460.1-P | Field mustard | nucleus | 42.79 | 34.55 |
| KRH03987 | Soybean | nucleus | 39.64 | 34.51 |
| Bra010463.1-P | Field mustard | nucleus | 34.68 | 34.38 |
| Zm00001d006169_P001 | Maize | plastid | 39.64 | 33.33 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 46.85 | 32.7 |
| PGSC0003DMT400006896 | Potato | cytosol | 17.57 | 29.1 |
| KRH38616 | Soybean | plastid | 41.44 | 28.13 |
| PGSC0003DMT400090651 | Potato | nucleus | 39.19 | 26.44 |
Protein Annotations
| EntrezGene:100281239 | Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | UniProt:B6STH9 |
| InterPro:DNA-bd_dom_sf | EMBL:EU956044 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | ProteinID:ONM14806.1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF21 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000182B57A | EnsemblPlantsGene:Zm00001d002618 |
| EnsemblPlants:Zm00001d002618_P001 | EnsemblPlants:Zm00001d002618_T001 | SEG:seg | : | : | : |
Description
AP2-EREBP-transcription factor 105Dehydration-responsive element-binding protein 1D
Coordinates
chr2:-:16960148..16960816
Molecular Weight (calculated)
24033.0 Da
IEP (calculated)
5.159
GRAVY (calculated)
-0.555
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWAYYGSGY STPASGGGGG DEDAYMTVSS APPKRRAGRT KFKETRHPVY KGVRSRNPGR WVCEVREPHG RQRIWLGTFE TAEMAARAHD VAALALRGRA
101: ACLNFADSPR RLRVPAQGAG HDEIRRAAVE AAELFRPQPG ERNVGGSEAA AEAAAAAPCA MGSGDLGGGE FPYYPVDDGL EFEMRGYLDM AQGMLIDPPQ
201: PAAGQSAWIE DEYECEVSLW SY
101: ACLNFADSPR RLRVPAQGAG HDEIRRAAVE AAELFRPQPG ERNVGGSEAA AEAAAAAPCA MGSGDLGGGE FPYYPVDDGL EFEMRGYLDM AQGMLIDPPQ
201: PAAGQSAWIE DEYECEVSLW SY
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.