Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013265_P003 | |
| Zm00001d014175_P004 | |
| Zm00001d034033_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Zm00001d014175_P004 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Zm00001d013265_P003 | AT4G16420.1 | 16603259 |
| AT4G25490.1 | Zm00001d034033_P002 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14131 | Sorghum | nucleus, plastid | 76.21 | 72.08 |
| Zm00001d052732_P001 | Maize | plastid | 48.9 | 49.78 |
| Zm00001d006170_P001 | Maize | nucleus | 49.78 | 49.13 |
| Zm00001d021208_P001 | Maize | plastid | 49.34 | 48.48 |
| Zm00001d021205_P001 | Maize | plastid | 50.66 | 46.75 |
| Zm00001d021207_P001 | Maize | nucleus | 47.14 | 44.96 |
| Zm00001d006169_P001 | Maize | plastid | 50.22 | 43.18 |
| Zm00001d002618_P001 | Maize | nucleus | 40.97 | 41.89 |
| Zm00001d017592_P001 | Maize | nucleus | 41.41 | 40.69 |
| Os06t0165600-01 | Rice | nucleus, plastid | 44.05 | 39.53 |
| Solyc03g026270.1.1 | Tomato | nucleus | 34.36 | 38.05 |
| Bra027612.1-P | Field mustard | nucleus | 30.84 | 37.84 |
| CDY49205 | Canola | nucleus | 30.84 | 37.84 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 36.12 | 37.61 |
| Solyc03g026280.2.1 | Tomato | nucleus | 34.36 | 37.14 |
| AT1G63030.2 | Thale cress | nucleus | 29.52 | 37.02 |
| PGSC0003DMT400037122 | Potato | nucleus | 35.24 | 36.87 |
| CDX92710 | Canola | nucleus | 34.8 | 36.74 |
| KRG91437 | Soybean | nucleus | 33.48 | 36.72 |
| Bra016763.1-P | Field mustard | nucleus | 32.6 | 36.63 |
| CDY71145 | Canola | nucleus | 32.6 | 36.63 |
| KRH35383 | Soybean | nucleus | 33.04 | 36.59 |
| Bra022770.1-P | Field mustard | nucleus | 34.36 | 36.45 |
| CDX84868 | Canola | nucleus | 34.36 | 36.45 |
| CDY66018 | Canola | nucleus | 34.36 | 36.45 |
| CDY70584 | Canola | nucleus | 33.92 | 35.98 |
| Bra019162.1-P | Field mustard | nucleus | 33.92 | 35.98 |
| CDY31270 | Canola | nucleus | 31.72 | 35.64 |
| CDY52356 | Canola | nucleus | 33.92 | 35.48 |
| AT4G25490.1 | Thale cress | nucleus | 33.04 | 35.21 |
| AT4G25480.1 | Thale cress | nucleus | 33.48 | 35.19 |
| Solyc03g124110.1.1 | Tomato | nucleus | 33.92 | 35.0 |
| CDY57075 | Canola | nucleus | 31.72 | 34.78 |
| Bra019777.1-P | Field mustard | nucleus | 31.28 | 34.47 |
| CDY52360 | Canola | nucleus | 33.48 | 34.39 |
| CDY16016 | Canola | nucleus | 30.4 | 34.33 |
| CDY65499 | Canola | nucleus | 32.6 | 34.26 |
| Bra028290.1-P | Field mustard | nucleus | 33.04 | 34.09 |
| CDY00510 | Canola | nucleus | 33.04 | 34.09 |
| Solyc12g056430.1.1 | Tomato | nucleus | 30.4 | 33.99 |
| AT4G25470.1 | Thale cress | nucleus | 32.16 | 33.8 |
| Bra026963.1-P | Field mustard | nucleus | 30.4 | 33.66 |
| CDY26574 | Canola | nucleus | 30.4 | 33.66 |
| Zm00001d036003_P001 | Maize | nucleus | 34.36 | 33.62 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.06 | 33.61 |
| AT1G12610.1 | Thale cress | nucleus | 30.84 | 33.49 |
| AT5G51990.1 | Thale cress | nucleus | 33.04 | 33.48 |
| Zm00001d041981_P001 | Maize | nucleus | 36.12 | 33.47 |
| PGSC0003DMT400010876 | Potato | nucleus | 30.4 | 33.33 |
| CDY31925 | Canola | nucleus | 32.16 | 33.18 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.94 | 33.08 |
| PGSC0003DMT400037120 | Potato | nucleus | 34.36 | 33.05 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 33.92 | 32.77 |
| PGSC0003DMT400037121 | Potato | nucleus | 35.68 | 31.4 |
| PGSC0003DMT400032622 | Potato | nucleus | 32.16 | 30.67 |
| Bra010461.1-P | Field mustard | nucleus | 34.8 | 30.62 |
| CDY66013 | Canola | nucleus | 25.55 | 30.37 |
| Solyc08g007820.1.1 | Tomato | nucleus | 32.6 | 30.33 |
| PGSC0003DMT400032621 | Potato | nucleus | 32.6 | 30.33 |
| KRH09144 | Soybean | nucleus | 30.84 | 30.3 |
| KRH77483 | Soybean | nucleus | 29.96 | 30.09 |
| CDY52358 | Canola | nucleus | 24.67 | 29.63 |
| Solyc08g007830.1.1 | Tomato | nucleus | 29.52 | 29.26 |
| KRH57258 | Soybean | nucleus | 32.16 | 28.74 |
| KRH03987 | Soybean | nucleus | 31.72 | 28.24 |
| Bra010460.1-P | Field mustard | nucleus | 33.48 | 27.64 |
| PGSC0003DMT400032623 | Potato | nucleus | 29.52 | 26.91 |
| Bra010463.1-P | Field mustard | nucleus | 25.55 | 25.89 |
| PGSC0003DMT400006896 | Potato | cytosol | 14.54 | 24.63 |
| KRH38616 | Soybean | plastid | 32.16 | 22.32 |
| PGSC0003DMT400090651 | Potato | nucleus | 31.72 | 21.88 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A1D6KL32 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| ProteinID:ONM03599.1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF11 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0001BFBDB7 | EnsemblPlantsGene:Zm00001d031728 | EnsemblPlants:Zm00001d031728_P001 | EnsemblPlants:Zm00001d031728_T001 |
| SEG:seg | : | : | : | : | : |
Description
AP2-EREBP-transcription factor 79Dehydration-responsive element-binding protein 1B
Coordinates
chr1:-:199720829..199721512
Molecular Weight (calculated)
23245.9 Da
IEP (calculated)
4.593
GRAVY (calculated)
-0.395
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTDPPPAS PSSPGPPGGQ PSPPKRPAGR TKFQETRHPV FRGVRRRGRA GRWVCEVRVP GSRGDRLWVG TFDTAEAAAR AHDAAMLALC GAAASLNFAD
101: SAWLLHVPRA PAGLPGVQRA ATDAVAAFLR TQQPRGGGDA PAAASQGQRA NAATETELDH AGASAAAVDG GGGSVVEVDV FGGMDDAGSY YASLAQGLLI
201: DPPPPAVECP EEEDDDCGGA GEMELWD
101: SAWLLHVPRA PAGLPGVQRA ATDAVAAFLR TQQPRGGGDA PAAASQGQRA NAATETELDH AGASAAAVDG GGGSVVEVDV FGGMDDAGSY YASLAQGLLI
201: DPPPPAVECP EEEDDDCGGA GEMELWD
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.