Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0750800-01 | |
| Os10t0415900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Os10t0415900-01 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Os03t0750800-01 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031728_P001 | Maize | nucleus, plastid | 39.53 | 44.05 |
| EES14131 | Sorghum | nucleus, plastid | 39.92 | 42.08 |
| Os09t0522200-01 | Rice | nucleus | 30.83 | 32.77 |
| Os09t0522100-00 | Rice | nucleus | 31.62 | 32.52 |
| AT1G63030.2 | Thale cress | nucleus | 22.13 | 30.94 |
| CDY49205 | Canola | nucleus | 22.13 | 30.27 |
| Bra027612.1-P | Field mustard | nucleus | 22.13 | 30.27 |
| Os06t0127100-01 | Rice | nucleus | 24.9 | 29.44 |
| Bra016763.1-P | Field mustard | nucleus | 22.92 | 28.71 |
| CDY71145 | Canola | nucleus | 22.92 | 28.71 |
| Solyc03g026270.1.1 | Tomato | nucleus | 22.92 | 28.29 |
| KRH35383 | Soybean | nucleus | 22.92 | 28.29 |
| CDY31270 | Canola | nucleus | 22.53 | 28.22 |
| KRG91437 | Soybean | nucleus | 22.92 | 28.02 |
| CDY57075 | Canola | nucleus | 22.92 | 28.02 |
| CDX92710 | Canola | nucleus | 23.72 | 27.91 |
| AT4G25480.1 | Thale cress | nucleus | 23.72 | 27.78 |
| Bra019777.1-P | Field mustard | nucleus | 22.53 | 27.67 |
| Solyc03g026280.2.1 | Tomato | nucleus | 22.92 | 27.62 |
| Bra019162.1-P | Field mustard | nucleus | 23.32 | 27.57 |
| CDY70584 | Canola | nucleus | 23.32 | 27.57 |
| CDY16016 | Canola | nucleus | 21.74 | 27.36 |
| AT1G12610.1 | Thale cress | nucleus | 22.53 | 27.27 |
| AT4G25490.1 | Thale cress | nucleus | 22.92 | 27.23 |
| PGSC0003DMT400037122 | Potato | nucleus | 23.32 | 27.19 |
| CDX84868 | Canola | nucleus | 22.92 | 27.1 |
| CDY66018 | Canola | nucleus | 22.92 | 27.1 |
| Bra022770.1-P | Field mustard | nucleus | 22.92 | 27.1 |
| Os04t0572400-00 | Rice | nucleus | 23.32 | 26.94 |
| CDY26574 | Canola | nucleus | 21.74 | 26.83 |
| Bra026963.1-P | Field mustard | nucleus | 21.74 | 26.83 |
| Solyc03g124110.1.1 | Tomato | nucleus | 23.32 | 26.82 |
| Os02t0677300-02 | Rice | nucleus | 23.72 | 26.79 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 22.92 | 26.61 |
| Solyc12g056430.1.1 | Tomato | nucleus | 21.34 | 26.6 |
| PGSC0003DMT400010876 | Potato | nucleus | 21.74 | 26.57 |
| AT4G25470.1 | Thale cress | nucleus | 22.53 | 26.39 |
| CDY52356 | Canola | nucleus | 22.53 | 26.27 |
| CDY52360 | Canola | nucleus | 22.92 | 26.24 |
| Bra028290.1-P | Field mustard | nucleus | 22.53 | 25.91 |
| CDY31925 | Canola | nucleus | 22.53 | 25.91 |
| CDY00510 | Canola | nucleus | 22.53 | 25.91 |
| CDY65499 | Canola | nucleus | 21.74 | 25.46 |
| PGSC0003DMT400037120 | Potato | nucleus | 23.72 | 25.42 |
| Os01t0968800-00 | Rice | nucleus | 21.74 | 25.11 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 23.32 | 25.11 |
| AT5G51990.1 | Thale cress | nucleus | 22.13 | 25.0 |
| Bra010461.1-P | Field mustard | nucleus | 23.72 | 23.26 |
| PGSC0003DMT400037121 | Potato | nucleus | 23.72 | 23.26 |
| Solyc08g007830.1.1 | Tomato | nucleus | 20.95 | 23.14 |
| PGSC0003DMT400032622 | Potato | nucleus | 21.74 | 23.11 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 11.86 | 23.08 |
| KRH77483 | Soybean | nucleus | 20.16 | 22.57 |
| KRH57258 | Soybean | nucleus | 22.53 | 22.44 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 10.67 | 22.13 |
| KRH03987 | Soybean | nucleus | 22.13 | 21.96 |
| PGSC0003DMT400032621 | Potato | nucleus | 20.95 | 21.72 |
| Solyc08g007820.1.1 | Tomato | nucleus | 20.95 | 21.72 |
| PGSC0003DMT400032623 | Potato | nucleus | 21.34 | 21.69 |
| KRH09144 | Soybean | nucleus | 19.37 | 21.21 |
| Bra010460.1-P | Field mustard | nucleus | 22.53 | 20.73 |
| CDY52358 | Canola | nucleus | 15.41 | 20.63 |
| CDY66013 | Canola | nucleus | 15.41 | 20.42 |
| PGSC0003DMT400090651 | Potato | nucleus | 23.32 | 17.93 |
| Bra010463.1-P | Field mustard | nucleus | 15.81 | 17.86 |
| KRH38616 | Soybean | plastid | 21.74 | 16.82 |
| PGSC0003DMT400006896 | Potato | cytosol | 7.91 | 14.93 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | ProteinID:AAX23721.1 | EMBL:AF243384 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EMBL:AY345235 | EMBL:AY607691 | ProteinID:BAD67595.1 | ProteinID:BAD67857.1 | ProteinID:BAF18823.1 | ProteinID:BAS96326.1 |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | EnsemblPlantsGene:Os06g0165600 | EnsemblPlants:Os06t0165600-01 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 |
| PANTHER:PTHR31839:SF11 | UniProt:Q6J1A5 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00000A6159 | SEG:seg |
Description
DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1DCRT/DRE binding factor (Transcription factor RCBF4). (Os06t0165600-01)
Coordinates
chr6:+:3310919..3311822
Molecular Weight (calculated)
27669.7 Da
IEP (calculated)
10.747
GRAVY (calculated)
-0.029
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNTAASGQ LMTSSAEATP SSPKRPAGRT KFQETRHLVF RGVRWRGCAG RWVCKVRVPG SRGDRFWIGT SDTAEETART HDAAMLALCG ASASLNFADS
101: AWLLHVPRAP VVSGLRPPAA RCATRCLQGH RRVPAPGRGS TATATATSGD AASTAPPSAP VLSAKQCEFI FLSSLDCWML MSKLISSSRA KGSLCLRKNP
201: ISFCMVTNSY TALLLEYIIL QMNSMIVLIH ELSKYQVFLL LTMITHHLFQ WRR
101: AWLLHVPRAP VVSGLRPPAA RCATRCLQGH RRVPAPGRGS TATATATSGD AASTAPPSAP VLSAKQCEFI FLSSLDCWML MSKLISSSRA KGSLCLRKNP
201: ISFCMVTNSY TALLLEYIIL QMNSMIVLIH ELSKYQVFLL LTMITHHLFQ WRR
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.