Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | OQU91781 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | EER90868 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031728_P001 | Maize | nucleus, plastid | 72.08 | 76.21 |
| EER99213 | Sorghum | nucleus | 47.08 | 48.09 |
| EER99212 | Sorghum | nucleus, plastid | 46.67 | 46.67 |
| EER99214 | Sorghum | plastid | 45.0 | 44.26 |
| EER99211 | Sorghum | plastid | 47.5 | 41.45 |
| Os06t0165600-01 | Rice | nucleus, plastid | 42.08 | 39.92 |
| EES11288 | Sorghum | nucleus | 37.08 | 39.21 |
| KRG91437 | Soybean | nucleus | 33.75 | 39.13 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 35.42 | 38.99 |
| Bra027612.1-P | Field mustard | nucleus | 29.58 | 38.38 |
| CDY49205 | Canola | nucleus | 29.58 | 38.38 |
| Solyc03g026270.1.1 | Tomato | nucleus | 32.5 | 38.05 |
| KRH35383 | Soybean | nucleus | 32.5 | 38.05 |
| AT1G63030.2 | Thale cress | nucleus | 28.33 | 37.57 |
| PGSC0003DMT400037122 | Potato | nucleus | 33.33 | 36.87 |
| CDY52356 | Canola | nucleus | 32.92 | 36.41 |
| CDX92710 | Canola | nucleus | 32.5 | 36.28 |
| CDY52360 | Canola | nucleus | 33.33 | 36.2 |
| Solyc03g026280.2.1 | Tomato | nucleus | 31.67 | 36.19 |
| Bra016763.1-P | Field mustard | nucleus | 30.42 | 36.14 |
| CDY71145 | Canola | nucleus | 30.42 | 36.14 |
| CDY65499 | Canola | nucleus | 32.5 | 36.11 |
| CDY66018 | Canola | nucleus | 32.08 | 35.98 |
| CDX84868 | Canola | nucleus | 32.08 | 35.98 |
| Bra022770.1-P | Field mustard | nucleus | 32.08 | 35.98 |
| CDY70584 | Canola | nucleus | 31.67 | 35.51 |
| Bra019162.1-P | Field mustard | nucleus | 31.67 | 35.51 |
| Solyc03g124110.1.1 | Tomato | nucleus | 32.5 | 35.45 |
| AT4G25480.1 | Thale cress | nucleus | 31.67 | 35.19 |
| CDY31270 | Canola | nucleus | 29.58 | 35.15 |
| CDY00510 | Canola | nucleus | 32.08 | 35.0 |
| Bra028290.1-P | Field mustard | nucleus | 32.08 | 35.0 |
| AT4G25490.1 | Thale cress | nucleus | 30.83 | 34.74 |
| Bra019777.1-P | Field mustard | nucleus | 29.58 | 34.47 |
| AT1G12610.1 | Thale cress | nucleus | 30.0 | 34.45 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 17.5 | 34.43 |
| CDY16016 | Canola | nucleus | 28.75 | 34.33 |
| CDY57075 | Canola | nucleus | 29.58 | 34.3 |
| AT4G25470.1 | Thale cress | nucleus | 30.83 | 34.26 |
| CDY31925 | Canola | nucleus | 31.25 | 34.09 |
| Bra026963.1-P | Field mustard | nucleus | 28.75 | 33.66 |
| CDY26574 | Canola | nucleus | 28.75 | 33.66 |
| AT5G51990.1 | Thale cress | nucleus | 31.25 | 33.48 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 17.92 | 33.08 |
| Solyc12g056430.1.1 | Tomato | nucleus | 27.92 | 33.0 |
| PGSC0003DMT400010876 | Potato | nucleus | 28.33 | 32.85 |
| PGSC0003DMT400037120 | Potato | nucleus | 32.08 | 32.63 |
| EER87753 | Sorghum | nucleus | 33.75 | 32.53 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 45.0 | 32.24 |
| EES02136 | Sorghum | nucleus | 32.5 | 32.23 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 30.83 | 31.49 |
| Bra010461.1-P | Field mustard | nucleus | 33.75 | 31.4 |
| PGSC0003DMT400037121 | Potato | nucleus | 33.33 | 31.01 |
| KRH09144 | Soybean | nucleus | 29.58 | 30.74 |
| KRH77483 | Soybean | nucleus | 28.75 | 30.53 |
| CDY66013 | Canola | nucleus | 24.17 | 30.37 |
| KRH57258 | Soybean | nucleus | 32.08 | 30.32 |
| CDY52358 | Canola | nucleus | 23.33 | 29.63 |
| PGSC0003DMT400032622 | Potato | nucleus | 29.17 | 29.41 |
| PGSC0003DMT400032621 | Potato | nucleus | 29.58 | 29.1 |
| Solyc08g007820.1.1 | Tomato | nucleus | 29.58 | 29.1 |
| Bra010460.1-P | Field mustard | nucleus | 33.33 | 29.09 |
| KRH03987 | Soybean | nucleus | 30.83 | 29.02 |
| Solyc08g007830.1.1 | Tomato | nucleus | 27.5 | 28.82 |
| OQU85641 | Sorghum | nucleus | 39.17 | 28.23 |
| Bra010463.1-P | Field mustard | nucleus | 25.0 | 26.79 |
| PGSC0003DMT400032623 | Potato | nucleus | 26.67 | 25.7 |
| PGSC0003DMT400006896 | Potato | cytosol | 13.75 | 24.63 |
| KRH38616 | Soybean | plastid | 31.67 | 23.24 |
| PGSC0003DMT400090651 | Potato | nucleus | 30.42 | 22.19 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | EntrezGene:8060554 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | UniProt:C5YH67 |
| InterPro:DNA-bd_dom_sf | EnsemblPlants:EES14131 | ProteinID:EES14131 | ProteinID:EES14131.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF11 | SMART:SM00380 | EnsemblPlantsGene:SORBI_3007G181500 | SUPFAM:SSF54171 |
| UniParc:UPI0001A87CB2 | RefSeq:XP_002444636.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:61478933..61480345
Molecular Weight (calculated)
24752.8 Da
IEP (calculated)
5.290
GRAVY (calculated)
-0.311
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFKRTTTEP PAAATSPSAS PSLGSSGQHP SPPKRPAGRT KFQETRHPVF RGVRRRGRAG RWVCEVRVPG SRGDRLWVGT FDTAEAAARA HDAAMLALCG
101: DAACLNFADS ASLLHVPRPA ADPSAAVGLP DVQRAATEAV AGFMLQRQRG GHDAPAAASQ DNAASASAAA AGVDHAHAPR AVGPPAVDSL LELDVFGGMD
201: DAGSYYASLA QGLLIDPPPP AVDCPDEDED CGAGEMELWG
101: DAACLNFADS ASLLHVPRPA ADPSAAVGLP DVQRAATEAV AGFMLQRQRG GHDAPAAASQ DNAASASAAA AGVDHAHAPR AVGPPAVDSL LELDVFGGMD
201: DAGSYYASLA QGLLIDPPPP AVDCPDEDED CGAGEMELWG
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.