Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0750800-01 | |
| Os10t0415900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Os10t0415900-01 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Os03t0750800-01 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G015200.1 | Wheat | nucleus | 60.75 | 68.06 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 59.35 | 66.84 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 41.59 | 66.42 |
| TraesCS7D01G052400.1 | Wheat | nucleus | 67.29 | 65.75 |
| TraesCS7A01G057700.1 | Wheat | nucleus | 66.36 | 63.11 |
| TraesCS7A01G057800.1 | Wheat | nucleus, plastid | 61.68 | 62.86 |
| Zm00001d036003_P001 | Maize | nucleus | 67.76 | 62.5 |
| TraesCS4A01G433300.1 | Wheat | nucleus | 63.08 | 62.5 |
| TraesCS4A01G433200.1 | Wheat | nucleus | 64.95 | 60.96 |
| TraesCS7D01G052600.1 | Wheat | nucleus | 63.55 | 60.71 |
| EER87753 | Sorghum | nucleus | 70.56 | 60.64 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 63.08 | 59.47 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 49.53 | 51.71 |
| Os02t0677300-02 | Rice | nucleus | 50.47 | 48.21 |
| Os04t0572400-00 | Rice | nucleus | 47.66 | 46.58 |
| KRH35383 | Soybean | nucleus | 42.99 | 44.88 |
| KRG91437 | Soybean | nucleus | 42.06 | 43.48 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 43.93 | 43.12 |
| AT4G25480.1 | Thale cress | nucleus | 42.99 | 42.59 |
| AT4G25490.1 | Thale cress | nucleus | 42.06 | 42.25 |
| AT1G63030.2 | Thale cress | nucleus | 35.51 | 41.99 |
| Solyc03g026270.1.1 | Tomato | nucleus | 40.19 | 41.95 |
| CDY66018 | Canola | nucleus | 41.59 | 41.59 |
| CDY52356 | Canola | nucleus | 42.06 | 41.47 |
| CDX92710 | Canola | nucleus | 41.59 | 41.4 |
| CDX84868 | Canola | nucleus | 41.12 | 41.12 |
| Bra019162.1-P | Field mustard | nucleus | 41.12 | 41.12 |
| CDY70584 | Canola | nucleus | 41.12 | 41.12 |
| Bra022770.1-P | Field mustard | nucleus | 41.12 | 41.12 |
| PGSC0003DMT400037122 | Potato | nucleus | 41.59 | 41.01 |
| CDY65499 | Canola | nucleus | 40.65 | 40.28 |
| CDY00510 | Canola | nucleus | 41.12 | 40.0 |
| Bra028290.1-P | Field mustard | nucleus | 41.12 | 40.0 |
| CDY52360 | Canola | nucleus | 41.12 | 39.82 |
| AT4G25470.1 | Thale cress | nucleus | 40.19 | 39.81 |
| CDY57075 | Canola | nucleus | 38.32 | 39.61 |
| CDY31925 | Canola | nucleus | 40.65 | 39.55 |
| Solyc03g026280.2.1 | Tomato | nucleus | 38.78 | 39.52 |
| CDY16016 | Canola | nucleus | 36.92 | 39.3 |
| AT5G51990.1 | Thale cress | nucleus | 41.12 | 39.29 |
| Bra016763.1-P | Field mustard | nucleus | 36.92 | 39.11 |
| CDY71145 | Canola | nucleus | 36.92 | 39.11 |
| Bra019777.1-P | Field mustard | nucleus | 37.38 | 38.84 |
| Bra027612.1-P | Field mustard | nucleus | 33.18 | 38.38 |
| CDY49205 | Canola | nucleus | 33.18 | 38.38 |
| AT1G12610.1 | Thale cress | nucleus | 37.38 | 38.28 |
| CDY31270 | Canola | nucleus | 35.98 | 38.12 |
| CDY26574 | Canola | nucleus | 36.45 | 38.05 |
| Bra026963.1-P | Field mustard | nucleus | 36.45 | 38.05 |
| Os01t0968800-00 | Rice | nucleus | 38.78 | 37.9 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 41.59 | 37.87 |
| Solyc03g124110.1.1 | Tomato | nucleus | 38.78 | 37.73 |
| PGSC0003DMT400010876 | Potato | nucleus | 35.98 | 37.2 |
| PGSC0003DMT400037120 | Potato | nucleus | 40.65 | 36.86 |
| CDY52358 | Canola | nucleus | 32.24 | 36.51 |
| Solyc12g056430.1.1 | Tomato | nucleus | 34.58 | 36.45 |
| Os09t0522200-01 | Rice | nucleus | 40.19 | 36.13 |
| KRH09144 | Soybean | nucleus | 38.78 | 35.93 |
| PGSC0003DMT400037121 | Potato | nucleus | 42.99 | 35.66 |
| CDY66013 | Canola | nucleus | 31.78 | 35.6 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.09 | 35.25 |
| Solyc08g007830.1.1 | Tomato | nucleus | 37.38 | 34.93 |
| KRH77483 | Soybean | nucleus | 35.98 | 34.07 |
| Bra010461.1-P | Field mustard | nucleus | 40.65 | 33.72 |
| PGSC0003DMT400032622 | Potato | nucleus | 37.38 | 33.61 |
| Os09t0522100-00 | Rice | nucleus | 38.32 | 33.33 |
| Solyc08g007820.1.1 | Tomato | nucleus | 37.85 | 33.2 |
| PGSC0003DMT400032621 | Potato | nucleus | 36.92 | 32.38 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.63 | 32.31 |
| Bra010460.1-P | Field mustard | nucleus | 41.12 | 32.0 |
| KRH03987 | Soybean | nucleus | 37.85 | 31.76 |
| PGSC0003DMT400032623 | Potato | nucleus | 36.92 | 31.73 |
| KRH57258 | Soybean | nucleus | 37.38 | 31.5 |
| Bra010463.1-P | Field mustard | nucleus | 32.71 | 31.25 |
| KRH38616 | Soybean | plastid | 41.12 | 26.91 |
| PGSC0003DMT400006896 | Potato | cytosol | 16.82 | 26.87 |
| PGSC0003DMT400090651 | Potato | nucleus | 38.78 | 25.23 |
| Os06t0165600-01 | Rice | nucleus, plastid | 29.44 | 24.9 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:4339974 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EMBL:AY327040 |
| ProteinID:BAA90812.1 | ProteinID:BAC24831.1 | ProteinID:BAF18575.1 | ProteinID:BAS95931.1 | InterPro:DNA-bd_dom_sf | ProteinID:EAZ35676.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| EnsemblPlantsGene:Os06g0127100 | EnsemblPlants:Os06t0127100-01 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 |
| PANTHER:PTHR31839:SF0 | UniProt:Q9LWV3 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00000A7D0A | RefSeq:XP_015642451.1 |
| SEG:seg | : | : | : | : | : |
Description
DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1CDehydration-responsive element-binding protein 1C. (Os06t0127100-01)
Coordinates
chr6:+:1434770..1435533
Molecular Weight (calculated)
23111.6 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.542
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYYEQEEYA TVTSAPPKRP AGRTKFRETR HPVYRGVRRR GPAGRWVCEV REPNKKSRIW LGTFATAEAA ARAHDVAALA LRGRGACLNF ADSARLLRVD
101: PATLATPDDI RRAAIELAES CPHDAAAAAA SSSAAAVEAS AAAAPAMMMQ YQDDMAATPS SYDYAYYGNM DFDQPSYYYD GMGGGGEYQS WQMDGDDDGG
201: AGGYGGGDVT LWSY
101: PATLATPDDI RRAAIELAES CPHDAAAAAA SSSAAAVEAS AAAAPAMMMQ YQDDMAATPS SYDYAYYGNM DFDQPSYYYD GMGGGGEYQS WQMDGDDDGG
201: AGGYGGGDVT LWSY
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.