Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 86.39 | 86.84 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 51.83 | 73.88 |
| TraesCS7D01G052400.1 | Wheat | nucleus | 76.44 | 66.67 |
| TraesCS7D01G052600.1 | Wheat | nucleus | 75.39 | 64.29 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 74.35 | 62.56 |
| Os06t0127100-01 | Rice | nucleus | 68.06 | 60.75 |
| Zm00001d036003_P001 | Maize | nucleus | 62.3 | 51.29 |
| EER87753 | Sorghum | nucleus | 65.44 | 50.2 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 51.83 | 45.62 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 46.6 | 41.01 |
| AT1G63030.2 | Thale cress | nucleus | 37.17 | 39.23 |
| KRH35383 | Soybean | nucleus | 41.88 | 39.02 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 44.5 | 38.99 |
| AT4G25490.1 | Thale cress | nucleus | 43.46 | 38.97 |
| KRG91437 | Soybean | nucleus | 41.36 | 38.16 |
| AT4G25480.1 | Thale cress | nucleus | 42.93 | 37.96 |
| CDY65499 | Canola | nucleus | 42.93 | 37.96 |
| Solyc03g026270.1.1 | Tomato | nucleus | 40.31 | 37.56 |
| CDY66018 | Canola | nucleus | 41.88 | 37.38 |
| PGSC0003DMT400037122 | Potato | nucleus | 42.41 | 37.33 |
| CDY52356 | Canola | nucleus | 42.41 | 37.33 |
| Bra022770.1-P | Field mustard | nucleus | 41.36 | 36.92 |
| CDX84868 | Canola | nucleus | 41.36 | 36.92 |
| Bra019162.1-P | Field mustard | nucleus | 41.36 | 36.92 |
| CDY70584 | Canola | nucleus | 41.36 | 36.92 |
| Bra016763.1-P | Field mustard | nucleus | 38.74 | 36.63 |
| CDY71145 | Canola | nucleus | 38.74 | 36.63 |
| CDX92710 | Canola | nucleus | 40.84 | 36.28 |
| CDY57075 | Canola | nucleus | 39.27 | 36.23 |
| CDY52360 | Canola | nucleus | 41.88 | 36.2 |
| AT4G25470.1 | Thale cress | nucleus | 40.84 | 36.11 |
| CDY16016 | Canola | nucleus | 37.7 | 35.82 |
| CDY31270 | Canola | nucleus | 37.7 | 35.64 |
| TraesCS5D01G318300.1 | Wheat | nucleus | 39.79 | 35.51 |
| Bra019777.1-P | Field mustard | nucleus | 38.22 | 35.44 |
| Bra026963.1-P | Field mustard | nucleus | 37.7 | 35.12 |
| CDY26574 | Canola | nucleus | 37.7 | 35.12 |
| TraesCS6D01G173500.1 | Wheat | plastid | 44.5 | 34.98 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 42.93 | 34.89 |
| TraesCS6D01G366100.1 | Wheat | nucleus | 44.5 | 34.84 |
| AT5G51990.1 | Thale cress | nucleus | 40.84 | 34.82 |
| TraesCS5D01G317200.1 | Wheat | nucleus | 38.74 | 34.74 |
| TraesCS6D01G365800.1 | Wheat | nucleus | 44.5 | 34.69 |
| CDY49205 | Canola | nucleus | 33.51 | 34.59 |
| Bra027612.1-P | Field mustard | nucleus | 33.51 | 34.59 |
| Bra028290.1-P | Field mustard | nucleus | 39.79 | 34.55 |
| CDY00510 | Canola | nucleus | 39.79 | 34.55 |
| TraesCS5D01G318000.1 | Wheat | nucleus | 39.79 | 34.55 |
| CDY31925 | Canola | nucleus | 39.79 | 34.55 |
| Solyc03g026280.2.1 | Tomato | nucleus | 37.7 | 34.29 |
| KRH09144 | Soybean | nucleus | 41.36 | 34.2 |
| TraesCS5D01G317800.1 | Wheat | nucleus | 36.13 | 34.16 |
| Solyc03g124110.1.1 | Tomato | nucleus | 39.27 | 34.09 |
| TraesCS5D01G318600.1 | Wheat | nucleus | 41.36 | 33.91 |
| CDY52358 | Canola | nucleus | 33.51 | 33.86 |
| PGSC0003DMT400010876 | Potato | nucleus | 36.65 | 33.82 |
| KRH77483 | Soybean | nucleus | 39.79 | 33.63 |
| AT1G12610.1 | Thale cress | nucleus | 36.65 | 33.49 |
| TraesCS5D01G317300.1 | Wheat | nucleus | 40.31 | 33.48 |
| TraesCS5D01G318200.1 | Wheat | nucleus, plastid | 40.31 | 33.33 |
| Solyc08g007830.1.1 | Tomato | nucleus | 39.79 | 33.19 |
| TraesCS5D01G318400.1 | Wheat | nucleus | 41.36 | 33.05 |
| Solyc12g056430.1.1 | Tomato | nucleus | 35.08 | 33.0 |
| PGSC0003DMT400032622 | Potato | nucleus | 40.84 | 32.77 |
| TraesCS5D01G317500.1 | Wheat | nucleus | 38.74 | 32.74 |
| PGSC0003DMT400037120 | Potato | nucleus | 40.31 | 32.63 |
| TraesCS5D01G317700.1 | Wheat | nucleus | 36.13 | 32.55 |
| CDY66013 | Canola | nucleus | 32.46 | 32.46 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.42 | 31.97 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 39.79 | 31.93 |
| TraesCS5D01G318100.1 | Wheat | nucleus, plastid | 38.74 | 31.62 |
| Solyc08g007820.1.1 | Tomato | nucleus | 40.31 | 31.56 |
| TraesCS5D01G317900.1 | Wheat | nucleus | 39.27 | 31.25 |
| TraesCS5D01G318500.1 | Wheat | nucleus | 39.27 | 30.86 |
| TraesCS5D01G318800.1 | Wheat | nucleus, plastid | 38.74 | 30.83 |
| PGSC0003DMT400032621 | Potato | nucleus | 39.27 | 30.74 |
| PGSC0003DMT400037121 | Potato | nucleus | 41.36 | 30.62 |
| Bra010461.1-P | Field mustard | nucleus | 41.36 | 30.62 |
| PGSC0003DMT400032623 | Potato | nucleus | 39.27 | 30.12 |
| KRH03987 | Soybean | nucleus | 39.79 | 29.8 |
| KRH57258 | Soybean | nucleus | 39.27 | 29.53 |
| Bra010460.1-P | Field mustard | nucleus | 42.41 | 29.45 |
| Bra010463.1-P | Field mustard | nucleus | 33.51 | 28.57 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.37 | 28.46 |
| TraesCS5D01G317100.1 | Wheat | nucleus, plastid | 39.27 | 27.88 |
| TraesCS5D01G317400.1 | Wheat | nucleus | 37.17 | 25.82 |
| TraesCS5D01G317600.1 | Wheat | nucleus, plastid | 29.32 | 25.11 |
| KRH38616 | Soybean | plastid | 40.84 | 23.85 |
| PGSC0003DMT400090651 | Potato | nucleus | 37.7 | 21.88 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.18 | 21.64 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PIRSF:PIRSF038123 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF0 |
| SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS2D01G015200 | EnsemblPlants:TraesCS2D01G015200.1 | TIGR:cd00018 | SEG:seg |
Description
No Description!
Coordinates
chr2D:-:7227396..7228157
Molecular Weight (calculated)
20574.7 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.515
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPGKGYTT VTTAPPKRPA GRTKFSETRH PVYHGVRRRA GRWVSEVREP NKKSRIWLGT FATPEAAARA HDVAALALRG RGACLNFADS VSLLAVDPAT
101: LRTPEDIRTA AIALAESACP AAAQASASES APAMMTMQEA AAAPYDDDLQ FVDMDQHSYY YDGMGAGGYW NTNGDDEDDD DGAGDITLWS Y
101: LRTPEDIRTA AIALAESACP AAAQASASES APAMMTMQEA AAAPYDDDLQ FVDMDQHSYY YDGMGAGGYW NTNGDDEDDD DGAGDITLWS Y
001: MNSFSAFSEM FGSDYEPQGG DYCPTLATSC PKKPAGRKKF RETRHPIYRG VRQRNSGKWV SEVREPNKKT RIWLGTFQTA EMAARAHDVA ALALRGRSAC
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY
Arabidopsis Description
DREB1BDRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.