Factsheet for TraesCS5D01G318400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G312100.1	Wheat	nucleus, plastid	95.82	95.82
TraesCS5A01G311500.1	Wheat	nucleus, plastid	95.4	95.8
HORVU5Hr1G080380.1	Barley	nucleus, plastid	86.19	76.87
TraesCS5D01G318600.1	Wheat	nucleus	74.06	75.97
TraesCS5D01G318200.1	Wheat	nucleus, plastid	60.67	62.77
TraesCS5D01G318100.1	Wheat	nucleus, plastid	59.83	61.11
TraesCS5D01G318800.1	Wheat	nucleus, plastid	58.58	58.33
TraesCS5D01G318500.1	Wheat	nucleus	58.58	57.61
TraesCS6D01G366100.1	Wheat	nucleus	58.58	57.38
TraesCS6D01G173500.1	Wheat	plastid	57.74	56.79
TraesCS6D01G365800.1	Wheat	nucleus	58.16	56.73
Os09t0522100-00	Rice	nucleus	58.16	56.5
TraesCS5D01G317900.1	Wheat	nucleus	56.49	56.25
Zm00001d021205_P001	Maize	plastid	56.07	54.47
Zm00001d006169_P001	Maize	plastid	56.07	50.76
EER99211	Sorghum	plastid	56.9	49.45
TraesCS5D01G318900.1	Wheat	nucleus	47.28	47.48
TraesCS5D01G317200.1	Wheat	nucleus	41.0	46.01
TraesCS5D01G317700.1	Wheat	nucleus	39.75	44.81
TraesCS5D01G318300.1	Wheat	nucleus	39.33	43.93
TraesCS5D01G318000.1	Wheat	nucleus	39.75	43.18
TraesCS5D01G317800.1	Wheat	nucleus	35.98	42.57
Solyc03g026270.1.1	Tomato	nucleus	36.4	42.44
TraesCS5D01G317300.1	Wheat	nucleus	40.59	42.17
TraesCS2D01G015200.1	Wheat	nucleus	33.05	41.36
PGSC0003DMT400037122	Potato	nucleus	37.24	41.01
Solyc03g026280.2.1	Tomato	nucleus	35.98	40.95
TraesCS5D01G317500.1	Wheat	nucleus	38.49	40.71
AT1G63030.2	Thale cress	nucleus	30.13	39.78
Solyc03g124110.1.1	Tomato	nucleus	36.4	39.55
CDY70584	Canola	nucleus	35.15	39.25
Bra019162.1-P	Field mustard	nucleus	35.15	39.25
CDX92710	Canola	nucleus	35.15	39.07
VIT_16s0100g00380.t01	Wine grape	nucleus	35.56	38.99
Bra027612.1-P	Field mustard	nucleus	30.13	38.92
CDY49205	Canola	nucleus	30.13	38.92
TraesCS6D01G238200.1	Wheat	nucleus	35.15	38.71
PGSC0003DMT400037119	Potato	mitochondrion	19.67	38.52
Solyc12g056430.1.1	Tomato	nucleus	32.64	38.42
Bra022770.1-P	Field mustard	nucleus	34.31	38.32
CDX84868	Canola	nucleus	34.31	38.32
CDY66018	Canola	nucleus	34.31	38.32
CDY52356	Canola	nucleus	34.31	37.79
PGSC0003DMT400010876	Potato	nucleus	32.64	37.68
AT4G25490.1	Thale cress	nucleus	33.47	37.56
CDY52360	Canola	nucleus	34.73	37.56
TraesCS2D01G397000.1	Wheat	nucleus	33.89	37.33
PGSC0003DMT400037120	Potato	nucleus	36.82	37.29
KRH35383	Soybean	nucleus	31.8	37.07
TraesCS7D01G052600.1	Wheat	nucleus	34.73	37.05
AT4G25480.1	Thale cress	nucleus	33.47	37.04
CDY65499	Canola	nucleus	33.47	37.04
VIT_02s0025g04460.t01	Wine grape	nucleus	36.4	37.02
TraesCS7D01G052500.1	Wheat	nucleus	35.15	37.0
TraesCS7D01G052400.1	Wheat	nucleus	33.89	36.99
PGSC0003DMT400032622	Potato	nucleus	36.82	36.97
CDY16016	Canola	nucleus	30.96	36.82
CDY57075	Canola	nucleus	31.8	36.72
KRG91437	Soybean	nucleus	31.8	36.72
CDY71145	Canola	nucleus	30.96	36.63
Bra016763.1-P	Field mustard	nucleus	30.96	36.63
TraesCS5D01G317100.1	Wheat	nucleus, plastid	41.0	36.43
Bra019777.1-P	Field mustard	nucleus	31.38	36.41
PGSC0003DMT400037118	Potato	mitochondrion	19.67	36.15
AT4G25470.1	Thale cress	nucleus	32.64	36.11
CDY26574	Canola	nucleus	30.96	36.1
Bra026963.1-P	Field mustard	nucleus	30.96	36.1
Solyc08g007820.1.1	Tomato	nucleus	36.82	36.07
PGSC0003DMT400032621	Potato	nucleus	36.82	36.07
CDY00510	Canola	nucleus	33.05	35.91
Bra028290.1-P	Field mustard	nucleus	33.05	35.91
AT1G12610.1	Thale cress	nucleus	31.38	35.89
AT5G51990.1	Thale cress	nucleus	33.47	35.71
CDY31925	Canola	nucleus	32.64	35.45
CDY31270	Canola	nucleus	29.71	35.15
PGSC0003DMT400037121	Potato	nucleus	37.24	34.5
TraesCS5D01G317400.1	Wheat	nucleus	39.33	34.18
TraesCS5D01G317600.1	Wheat	nucleus, plastid	31.38	33.63
KRH09144	Soybean	nucleus	32.22	33.33
KRH03987	Soybean	nucleus	35.15	32.94
Solyc08g007830.1.1	Tomato	nucleus	31.38	32.75
KRH77483	Soybean	nucleus	30.96	32.74
CDY66013	Canola	nucleus	25.52	31.94
KRH57258	Soybean	nucleus	33.89	31.89
Bra010461.1-P	Field mustard	nucleus	34.31	31.78
CDY52358	Canola	nucleus	25.1	31.75
PGSC0003DMT400032623	Potato	nucleus	32.22	30.92
Bra010460.1-P	Field mustard	nucleus	34.31	29.82
PGSC0003DMT400006896	Potato	cytosol	15.9	28.36
Bra010463.1-P	Field mustard	nucleus	25.94	27.68
PGSC0003DMT400090651	Potato	nucleus	34.31	24.92
KRH38616	Soybean	plastid	33.05	24.16

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF5	SMART:SM00380	SUPFAM:SSF54171
EnsemblPlantsGene:TraesCS5D01G318400	EnsemblPlants:TraesCS5D01G318400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:+:411196748..411197467

Molecular Weight (calculated)

25248.4 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.259

Length

239 amino acids

Sequence
(BLAST)

001: MDMTGSDQQG SSPSSPSSSS HLKRPAGRTK FKETRHPVYR GVRRRGSAGR WVCEVRVPGK RGERLWLGTH LTAEAAARAH DAAMLGLIGP STPCLNFADS
101: AWLLAVPSAL SDFADIRRAA LSAVADFQRR EAASGAATTS LAATVPVDDG TCSQSAESSM ENTGSSWTSS SLPSGNGMFE VPATLGCDMF ELDMSGEMDL
201: DTYYAYFAEG LLLEPPQPLV AGACWDTEGG GADAALWSY

Best Arabidopsis Sequence Match ( AT4G25480.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY

Arabidopsis Description

DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.