Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G268100.1 | Wheat | nucleus | 98.62 | 98.62 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 98.16 | 98.16 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 94.47 | 94.47 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 86.18 | 83.11 |
| Os02t0677300-02 | Rice | nucleus | 81.11 | 78.57 |
| Zm00001d017592_P001 | Maize | nucleus | 77.42 | 72.73 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 66.36 | 66.36 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 50.23 | 52.91 |
| TraesCS2D01G015200.1 | Wheat | nucleus | 45.62 | 51.83 |
| TraesCS7D01G052400.1 | Wheat | nucleus | 49.77 | 49.32 |
| OQU85641 | Sorghum | nucleus | 75.58 | 49.25 |
| KRG91437 | Soybean | nucleus | 46.54 | 48.79 |
| AT1G63030.2 | Thale cress | nucleus | 40.09 | 48.07 |
| KRH35383 | Soybean | nucleus | 44.7 | 47.32 |
| Bra028290.1-P | Field mustard | nucleus | 47.93 | 47.27 |
| CDY00510 | Canola | nucleus | 47.93 | 47.27 |
| AT4G25480.1 | Thale cress | nucleus | 47.0 | 47.22 |
| CDX92710 | Canola | nucleus | 46.54 | 46.98 |
| AT4G25490.1 | Thale cress | nucleus | 46.08 | 46.95 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 47.0 | 46.79 |
| CDY31925 | Canola | nucleus | 47.0 | 46.36 |
| CDX84868 | Canola | nucleus | 45.62 | 46.26 |
| Bra019162.1-P | Field mustard | nucleus | 45.62 | 46.26 |
| Bra022770.1-P | Field mustard | nucleus | 45.62 | 46.26 |
| CDY70584 | Canola | nucleus | 45.62 | 46.26 |
| AT5G51990.1 | Thale cress | nucleus | 47.47 | 45.98 |
| Bra027612.1-P | Field mustard | nucleus | 39.17 | 45.95 |
| CDY49205 | Canola | nucleus | 39.17 | 45.95 |
| CDY66018 | Canola | nucleus | 45.16 | 45.79 |
| CDY71145 | Canola | nucleus | 42.4 | 45.54 |
| Bra016763.1-P | Field mustard | nucleus | 42.4 | 45.54 |
| CDY57075 | Canola | nucleus | 43.32 | 45.41 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 47.47 | 45.37 |
| CDY16016 | Canola | nucleus | 41.94 | 45.27 |
| CDY31270 | Canola | nucleus | 41.94 | 45.05 |
| AT4G25470.1 | Thale cress | nucleus | 44.7 | 44.91 |
| Solyc03g026270.1.1 | Tomato | nucleus | 42.4 | 44.88 |
| PGSC0003DMT400037122 | Potato | nucleus | 44.7 | 44.7 |
| Bra019777.1-P | Field mustard | nucleus | 42.4 | 44.66 |
| Bra026963.1-P | Field mustard | nucleus | 41.94 | 44.39 |
| CDY26574 | Canola | nucleus | 41.94 | 44.39 |
| CDY52356 | Canola | nucleus | 44.24 | 44.24 |
| TraesCS7D01G052600.1 | Wheat | nucleus | 45.62 | 44.2 |
| PGSC0003DMT400010876 | Potato | nucleus | 41.94 | 43.96 |
| CDY65499 | Canola | nucleus | 43.32 | 43.52 |
| CDY52360 | Canola | nucleus | 43.78 | 42.99 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 46.54 | 42.98 |
| AT1G12610.1 | Thale cress | nucleus | 41.01 | 42.58 |
| Solyc03g026280.2.1 | Tomato | nucleus | 41.01 | 42.38 |
| Solyc12g056430.1.1 | Tomato | nucleus | 39.63 | 42.36 |
| TraesCS5D01G318000.1 | Wheat | nucleus | 42.86 | 42.27 |
| Solyc03g124110.1.1 | Tomato | nucleus | 42.4 | 41.82 |
| TraesCS5D01G317200.1 | Wheat | nucleus | 40.55 | 41.31 |
| KRH77483 | Soybean | nucleus | 42.86 | 41.15 |
| KRH09144 | Soybean | nucleus | 43.78 | 41.13 |
| TraesCS5D01G317800.1 | Wheat | nucleus | 38.25 | 41.09 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 23.04 | 40.98 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 24.42 | 40.77 |
| TraesCS5D01G318200.1 | Wheat | nucleus, plastid | 43.32 | 40.69 |
| TraesCS5D01G318300.1 | Wheat | nucleus | 40.09 | 40.65 |
| TraesCS5D01G317300.1 | Wheat | nucleus | 42.86 | 40.43 |
| CDY66013 | Canola | nucleus | 35.48 | 40.31 |
| TraesCS5D01G317500.1 | Wheat | nucleus | 41.94 | 40.27 |
| PGSC0003DMT400037120 | Potato | nucleus | 43.78 | 40.25 |
| Solyc08g007830.1.1 | Tomato | nucleus | 42.4 | 40.17 |
| TraesCS5D01G317700.1 | Wheat | nucleus | 39.17 | 40.09 |
| PGSC0003DMT400032621 | Potato | nucleus | 44.7 | 39.75 |
| CDY52358 | Canola | nucleus | 34.56 | 39.68 |
| PGSC0003DMT400032622 | Potato | nucleus | 43.32 | 39.5 |
| TraesCS5D01G318600.1 | Wheat | nucleus | 42.4 | 39.48 |
| Solyc08g007820.1.1 | Tomato | nucleus | 44.24 | 39.34 |
| PGSC0003DMT400032623 | Potato | nucleus | 44.7 | 38.96 |
| TraesCS5D01G318100.1 | Wheat | nucleus, plastid | 41.47 | 38.46 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 41.01 | 37.4 |
| TraesCS6D01G366100.1 | Wheat | nucleus | 41.94 | 37.3 |
| PGSC0003DMT400037121 | Potato | nucleus | 44.24 | 37.21 |
| TraesCS6D01G365800.1 | Wheat | nucleus | 41.94 | 37.14 |
| TraesCS6D01G173500.1 | Wheat | plastid | 41.01 | 36.63 |
| Bra010461.1-P | Field mustard | nucleus | 43.32 | 36.43 |
| KRH57258 | Soybean | nucleus | 42.4 | 36.22 |
| KRH03987 | Soybean | nucleus | 42.4 | 36.08 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 51.61 | 35.22 |
| TraesCS5D01G318400.1 | Wheat | nucleus | 38.71 | 35.15 |
| TraesCS5D01G317100.1 | Wheat | nucleus, plastid | 43.32 | 34.94 |
| Bra010463.1-P | Field mustard | nucleus | 35.94 | 34.82 |
| TraesCS5D01G318800.1 | Wheat | nucleus, plastid | 38.25 | 34.58 |
| TraesCS5D01G317900.1 | Wheat | nucleus | 38.25 | 34.58 |
| TraesCS5D01G318500.1 | Wheat | nucleus | 38.71 | 34.57 |
| Bra010460.1-P | Field mustard | nucleus | 43.78 | 34.55 |
| TraesCS5D01G317600.1 | Wheat | nucleus, plastid | 34.56 | 33.63 |
| TraesCS5D01G317400.1 | Wheat | nucleus | 42.4 | 33.45 |
| PGSC0003DMT400006896 | Potato | cytosol | 18.89 | 30.6 |
| KRH38616 | Soybean | plastid | 45.16 | 29.97 |
| PGSC0003DMT400090651 | Potato | nucleus | 39.63 | 26.14 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF20 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6D01G238200 | EnsemblPlants:TraesCS6D01G238200.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:+:338513999..338514652
Molecular Weight (calculated)
23197.2 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.446
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSALSSDY SSGTPSPVGA DGGNSEGFST YMTVSSAPPK RRAGRTKFKE TRHPVYKGVR RRNPGRWVCE VREPHSKQRI WLGTFETAEM AARAHDVAAL
101: ALRGRAACLN FADSPRRLRV PPVGASPDEI RRAAVEAAEA FLPAPVQSNA AAEEAAVAPT EQFAGDPYYG MDDGMDFGMQ GYLDMAQGML IAPPPMAGPS
201: ATVGEGDDDG EVSLWSY
101: ALRGRAACLN FADSPRRLRV PPVGASPDEI RRAAVEAAEA FLPAPVQSNA AAEEAAVAPT EQFAGDPYYG MDDGMDFGMQ GYLDMAQGML IAPPPMAGPS
201: ATVGEGDDDG EVSLWSY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.