Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G016540.1 | Barley | nucleus | 88.0 | 91.24 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 83.56 | 86.64 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 83.11 | 86.18 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 83.11 | 86.18 |
| Os02t0677300-02 | Rice | nucleus | 70.22 | 70.54 |
| Zm00001d017592_P001 | Maize | nucleus | 68.44 | 66.67 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 32.89 | 55.22 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 43.56 | 47.57 |
| OQU85641 | Sorghum | nucleus | 66.67 | 45.05 |
| KRG91437 | Soybean | nucleus | 40.89 | 44.44 |
| CDX92710 | Canola | nucleus | 42.22 | 44.19 |
| AT4G25490.1 | Thale cress | nucleus | 41.78 | 44.13 |
| AT1G63030.2 | Thale cress | nucleus | 35.11 | 43.65 |
| Bra028290.1-P | Field mustard | nucleus | 42.67 | 43.64 |
| CDY00510 | Canola | nucleus | 42.67 | 43.64 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 42.22 | 43.58 |
| AT4G25480.1 | Thale cress | nucleus | 41.78 | 43.52 |
| CDX84868 | Canola | nucleus | 41.33 | 43.46 |
| Bra022770.1-P | Field mustard | nucleus | 41.33 | 43.46 |
| Bra019162.1-P | Field mustard | nucleus | 41.33 | 43.46 |
| CDY70584 | Canola | nucleus | 41.33 | 43.46 |
| CDY66018 | Canola | nucleus | 40.89 | 42.99 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 39.11 | 42.93 |
| KRH35383 | Soybean | nucleus | 39.11 | 42.93 |
| AT5G51990.1 | Thale cress | nucleus | 42.67 | 42.86 |
| CDY31925 | Canola | nucleus | 41.78 | 42.73 |
| AT4G25470.1 | Thale cress | nucleus | 40.89 | 42.59 |
| CDY52356 | Canola | nucleus | 40.0 | 41.47 |
| Solyc03g026270.1.1 | Tomato | nucleus | 37.78 | 41.46 |
| CDY16016 | Canola | nucleus | 36.89 | 41.29 |
| CDY71145 | Canola | nucleus | 36.89 | 41.09 |
| Bra016763.1-P | Field mustard | nucleus | 36.89 | 41.09 |
| CDY57075 | Canola | nucleus | 37.78 | 41.06 |
| PGSC0003DMT400037122 | Potato | nucleus | 39.56 | 41.01 |
| CDY65499 | Canola | nucleus | 39.11 | 40.74 |
| Bra027612.1-P | Field mustard | nucleus | 33.33 | 40.54 |
| CDY49205 | Canola | nucleus | 33.33 | 40.54 |
| Bra026963.1-P | Field mustard | nucleus | 36.89 | 40.49 |
| CDY26574 | Canola | nucleus | 36.89 | 40.49 |
| Bra019777.1-P | Field mustard | nucleus | 36.89 | 40.29 |
| CDY52360 | Canola | nucleus | 39.56 | 40.27 |
| CDY31270 | Canola | nucleus | 36.0 | 40.1 |
| PGSC0003DMT400010876 | Potato | nucleus | 36.44 | 39.61 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 39.56 | 39.56 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.44 | 39.05 |
| Solyc12g056430.1.1 | Tomato | nucleus | 35.11 | 38.92 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 38.22 | 38.91 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 40.44 | 38.72 |
| AT1G12610.1 | Thale cress | nucleus | 35.56 | 38.28 |
| Solyc03g124110.1.1 | Tomato | nucleus | 37.33 | 38.18 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 36.0 | 37.85 |
| KRH09144 | Soybean | nucleus | 38.67 | 37.66 |
| Solyc08g007830.1.1 | Tomato | nucleus | 38.22 | 37.55 |
| CDY66013 | Canola | nucleus | 31.56 | 37.17 |
| KRH77483 | Soybean | nucleus | 37.33 | 37.17 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 17.33 | 37.14 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 36.89 | 37.05 |
| PGSC0003DMT400032621 | Potato | nucleus | 40.0 | 36.89 |
| PGSC0003DMT400032622 | Potato | nucleus | 38.67 | 36.55 |
| CDY52358 | Canola | nucleus | 30.67 | 36.51 |
| Solyc08g007820.1.1 | Tomato | nucleus | 39.56 | 36.48 |
| PGSC0003DMT400037120 | Potato | nucleus | 38.22 | 36.44 |
| PGSC0003DMT400032623 | Potato | nucleus | 39.11 | 35.34 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 36.44 | 35.19 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.67 | 34.43 |
| Bra010461.1-P | Field mustard | nucleus | 39.11 | 34.11 |
| PGSC0003DMT400037121 | Potato | nucleus | 38.22 | 33.33 |
| KRH57258 | Soybean | nucleus | 37.33 | 33.07 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 36.0 | 33.06 |
| KRH03987 | Soybean | nucleus | 37.33 | 32.94 |
| Bra010460.1-P | Field mustard | nucleus | 39.56 | 32.36 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.67 | 32.31 |
| Bra010463.1-P | Field mustard | nucleus | 32.0 | 32.14 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 45.33 | 32.08 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 31.56 | 31.7 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 33.78 | 31.54 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 39.11 | 30.24 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 38.67 | 28.9 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 33.78 | 28.36 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 35.56 | 28.17 |
| KRH38616 | Soybean | plastid | 39.56 | 27.22 |
| PGSC0003DMT400006896 | Potato | cytosol | 16.0 | 26.87 |
| PGSC0003DMT400090651 | Potato | nucleus | 34.22 | 23.4 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A287UGM4 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ncoils:Coil |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G065580 |
| EnsemblPlants:HORVU6Hr1G065580.4 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF20 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B477F23 | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:451547324..451548096
Molecular Weight (calculated)
21228.9 Da
IEP (calculated)
5.738
GRAVY (calculated)
-0.416
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVGALSSDY SSGTPSPVGA DGGNSEGFST YMTVSSAPPK RRAGRTKFKE TRHPVYKGVR RRNPGRWVCE VREPHSKQRI WLGTFETAEM AARAHDVAAL
101: ALRGRAACLN FADSPRRLRV PAVGASPDEI RXXXXXXXXX XXXXXXXXXX XXXXXXXXPA EEVAAAPTMQ FAGDPYYGMD DGMDFGMQGY LDMAQGMLIA
201: PPPLVGPSAT AGDGDDDGEV SLWSY
101: ALRGRAACLN FADSPRRLRV PAVGASPDEI RXXXXXXXXX XXXXXXXXXX XXXXXXXXPA EEVAAAPTMQ FAGDPYYGMD DGMDFGMQGY LDMAQGMLIA
201: PPPLVGPSAT AGDGDDDGEV SLWSY
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.