Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G186400.1 | Wheat | plastid | 83.93 | 79.32 |
| TraesCS6D01G365800.1 | Wheat | nucleus | 85.71 | 78.37 |
| TraesCS6B01G218000.1 | Wheat | plastid | 85.27 | 78.28 |
| TraesCS6B01G420100.1 | Wheat | nucleus | 85.27 | 77.96 |
| TraesCS6A01G381200.1 | Wheat | plastid | 85.27 | 77.96 |
| TraesCS6D01G366100.1 | Wheat | nucleus | 84.38 | 77.46 |
| TraesCS6D01G173500.1 | Wheat | plastid | 83.93 | 77.37 |
| TraesCS6A01G381000.1 | Wheat | nucleus | 84.82 | 77.24 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 61.61 | 56.33 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 55.36 | 53.22 |
| Os09t0522100-00 | Rice | nucleus | 57.14 | 52.03 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 55.36 | 51.45 |
| Zm00001d021205_P001 | Maize | plastid | 56.25 | 51.22 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 29.02 | 48.51 |
| Zm00001d006169_P001 | Maize | plastid | 56.7 | 48.11 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 56.7 | 47.39 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 59.82 | 47.18 |
| EER99211 | Sorghum | plastid | 55.36 | 45.09 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 20.98 | 44.76 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 40.18 | 42.06 |
| Solyc03g026280.2.1 | Tomato | nucleus | 38.39 | 40.95 |
| Solyc03g026270.1.1 | Tomato | nucleus | 36.61 | 40.0 |
| PGSC0003DMT400037122 | Potato | nucleus | 38.39 | 39.63 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 39.29 | 39.11 |
| AT1G63030.2 | Thale cress | nucleus | 29.91 | 37.02 |
| Solyc03g124110.1.1 | Tomato | nucleus | 36.16 | 36.82 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 36.16 | 36.65 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 35.27 | 36.41 |
| CDY49205 | Canola | nucleus | 29.91 | 36.22 |
| Bra027612.1-P | Field mustard | nucleus | 29.91 | 36.22 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 36.16 | 36.16 |
| Bra016763.1-P | Field mustard | nucleus | 32.59 | 36.14 |
| CDY71145 | Canola | nucleus | 32.59 | 36.14 |
| CDY31270 | Canola | nucleus | 32.14 | 35.64 |
| KRH35383 | Soybean | nucleus | 32.59 | 35.61 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 47.77 | 35.55 |
| KRG91437 | Soybean | nucleus | 32.59 | 35.27 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 33.93 | 34.86 |
| CDY16016 | Canola | nucleus | 31.25 | 34.83 |
| CDY57075 | Canola | nucleus | 32.14 | 34.78 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 31.7 | 34.63 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.25 | 34.48 |
| Bra019777.1-P | Field mustard | nucleus | 31.7 | 34.47 |
| PGSC0003DMT400037120 | Potato | nucleus | 36.16 | 34.32 |
| AT4G25490.1 | Thale cress | nucleus | 32.59 | 34.27 |
| AT4G25480.1 | Thale cress | nucleus | 33.04 | 34.26 |
| CDY26574 | Canola | nucleus | 31.25 | 34.15 |
| Bra026963.1-P | Field mustard | nucleus | 31.25 | 34.15 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.64 | 33.85 |
| CDY52356 | Canola | nucleus | 32.59 | 33.64 |
| PGSC0003DMT400010876 | Potato | nucleus | 30.8 | 33.33 |
| Bra022770.1-P | Field mustard | nucleus | 31.7 | 33.18 |
| Bra019162.1-P | Field mustard | nucleus | 31.7 | 33.18 |
| CDX84868 | Canola | nucleus | 31.7 | 33.18 |
| CDY66018 | Canola | nucleus | 31.7 | 33.18 |
| CDY70584 | Canola | nucleus | 31.7 | 33.18 |
| CDX92710 | Canola | nucleus | 31.7 | 33.02 |
| AT1G12610.1 | Thale cress | nucleus | 30.8 | 33.01 |
| AT4G25470.1 | Thale cress | nucleus | 31.7 | 32.87 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 17.86 | 32.79 |
| PGSC0003DMT400037121 | Potato | nucleus | 37.5 | 32.56 |
| KRH09144 | Soybean | nucleus | 33.48 | 32.47 |
| CDY00510 | Canola | nucleus | 31.7 | 32.27 |
| Bra028290.1-P | Field mustard | nucleus | 31.7 | 32.27 |
| CDY52360 | Canola | nucleus | 31.7 | 32.13 |
| CDY65499 | Canola | nucleus | 30.8 | 31.94 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 33.48 | 31.91 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 31.7 | 31.56 |
| CDY31925 | Canola | nucleus | 30.8 | 31.36 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 40.18 | 30.93 |
| PGSC0003DMT400032622 | Potato | nucleus | 32.59 | 30.67 |
| KRH77483 | Soybean | nucleus | 30.8 | 30.53 |
| KRH57258 | Soybean | nucleus | 34.38 | 30.32 |
| KRH03987 | Soybean | nucleus | 34.38 | 30.2 |
| Solyc08g007820.1.1 | Tomato | nucleus | 32.59 | 29.92 |
| AT5G51990.1 | Thale cress | nucleus | 29.91 | 29.91 |
| PGSC0003DMT400032621 | Potato | nucleus | 32.14 | 29.51 |
| Solyc08g007830.1.1 | Tomato | nucleus | 29.91 | 29.26 |
| Bra010461.1-P | Field mustard | nucleus | 32.14 | 27.91 |
| CDY52358 | Canola | nucleus | 23.21 | 27.51 |
| CDY66013 | Canola | nucleus | 23.21 | 27.23 |
| PGSC0003DMT400032623 | Potato | nucleus | 29.91 | 26.91 |
| Bra010460.1-P | Field mustard | nucleus | 31.7 | 25.82 |
| Bra010463.1-P | Field mustard | nucleus | 24.11 | 24.11 |
| PGSC0003DMT400006896 | Potato | cytosol | 13.84 | 23.13 |
| KRH38616 | Soybean | plastid | 33.48 | 22.94 |
| PGSC0003DMT400090651 | Potato | nucleus | 30.36 | 20.67 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A287V492 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G089320 | EnsemblPlants:HORVU6Hr1G089320.1 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF5 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B46A535 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr6H:+:569020996..569021669
Molecular Weight (calculated)
24235.5 Da
IEP (calculated)
7.031
GRAVY (calculated)
-0.261
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: YHHRPIDRQP AMDMGLEHSS SASSSTTEGG GAAWPWPPKR PAGRTKFRET RHPVFRGVRR RGSAGRWVCE VRVPGERGTR LWLGTYVTAE GAARAHDAAM
101: LMLRGRSAAC LNFRDSAWLL AVPPAFSNLS DVRRAAVQAV AEFLRRPEAT SAAAAVQEVT SSVVVPSSAA CSVPSADTAQ TSGEATFEVP AALDMDMFEL
201: DCLFGETDSD TYYYANLAQG LLME
101: LMLRGRSAAC LNFRDSAWLL AVPPAFSNLS DVRRAAVQAV AEFLRRPEAT SAAAAVQEVT SSVVVPSSAA CSVPSADTAQ TSGEATFEVP AALDMDMFEL
201: DCLFGETDSD TYYYANLAQG LLME
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.