Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G311800.1 | Wheat | plastid | 70.42 | 81.97 |
| TraesCS5B01G312700.1 | Wheat | nucleus | 69.72 | 81.48 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 65.14 | 76.76 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 52.82 | 61.22 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 47.18 | 59.82 |
| Os09t0522100-00 | Rice | nucleus | 50.0 | 57.72 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 46.83 | 57.08 |
| Zm00001d021205_P001 | Maize | plastid | 48.59 | 56.1 |
| Zm00001d006169_P001 | Maize | plastid | 50.35 | 54.17 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 51.06 | 54.1 |
| EER99211 | Sorghum | plastid | 50.0 | 51.64 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 21.83 | 46.27 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 16.9 | 45.71 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 34.15 | 45.33 |
| Solyc03g026280.2.1 | Tomato | nucleus | 32.75 | 44.29 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 34.51 | 43.56 |
| AT1G63030.2 | Thale cress | nucleus | 27.46 | 43.09 |
| Solyc03g026270.1.1 | Tomato | nucleus | 30.99 | 42.93 |
| Bra027612.1-P | Field mustard | nucleus | 27.82 | 42.7 |
| CDY49205 | Canola | nucleus | 27.82 | 42.7 |
| PGSC0003DMT400037122 | Potato | nucleus | 32.04 | 41.94 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 44.01 | 41.53 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 31.69 | 41.47 |
| KRH35383 | Soybean | nucleus | 29.93 | 41.46 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 32.04 | 41.18 |
| KRG91437 | Soybean | nucleus | 29.58 | 40.58 |
| Solyc03g124110.1.1 | Tomato | nucleus | 31.34 | 40.45 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 31.69 | 40.18 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 30.63 | 39.91 |
| Bra016763.1-P | Field mustard | nucleus | 28.17 | 39.6 |
| CDY71145 | Canola | nucleus | 28.17 | 39.6 |
| AT4G25490.1 | Thale cress | nucleus | 29.58 | 39.44 |
| Bra019777.1-P | Field mustard | nucleus | 28.52 | 39.32 |
| Bra019162.1-P | Field mustard | nucleus | 29.58 | 39.25 |
| CDY70584 | Canola | nucleus | 29.58 | 39.25 |
| Bra022770.1-P | Field mustard | nucleus | 29.58 | 39.25 |
| CDX84868 | Canola | nucleus | 29.58 | 39.25 |
| CDY57075 | Canola | nucleus | 28.52 | 39.13 |
| CDX92710 | Canola | nucleus | 29.58 | 39.07 |
| CDY16016 | Canola | nucleus | 27.46 | 38.81 |
| CDY66018 | Canola | nucleus | 29.23 | 38.78 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 31.69 | 38.3 |
| CDY31270 | Canola | nucleus | 27.11 | 38.12 |
| CDY26574 | Canola | nucleus | 27.46 | 38.05 |
| Bra026963.1-P | Field mustard | nucleus | 27.46 | 38.05 |
| AT4G25480.1 | Thale cress | nucleus | 28.87 | 37.96 |
| PGSC0003DMT400037120 | Potato | nucleus | 31.34 | 37.71 |
| AT4G25470.1 | Thale cress | nucleus | 28.52 | 37.5 |
| Solyc12g056430.1.1 | Tomato | nucleus | 26.76 | 37.44 |
| CDY52356 | Canola | nucleus | 28.52 | 37.33 |
| AT1G12610.1 | Thale cress | nucleus | 27.46 | 37.32 |
| Bra028290.1-P | Field mustard | nucleus | 28.87 | 37.27 |
| CDY00510 | Canola | nucleus | 28.87 | 37.27 |
| PGSC0003DMT400037121 | Potato | nucleus | 33.8 | 37.21 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 15.85 | 36.89 |
| CDY31925 | Canola | nucleus | 28.52 | 36.82 |
| PGSC0003DMT400010876 | Potato | nucleus | 26.76 | 36.72 |
| CDY52360 | Canola | nucleus | 28.52 | 36.65 |
| KRH09144 | Soybean | nucleus | 29.58 | 36.36 |
| KRH77483 | Soybean | nucleus | 28.52 | 35.84 |
| PGSC0003DMT400032622 | Potato | nucleus | 29.93 | 35.71 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 28.17 | 35.56 |
| AT5G51990.1 | Thale cress | nucleus | 27.82 | 35.27 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 35.92 | 35.05 |
| CDY65499 | Canola | nucleus | 26.41 | 34.72 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 15.85 | 34.62 |
| Solyc08g007820.1.1 | Tomato | nucleus | 29.58 | 34.43 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 24.65 | 34.15 |
| PGSC0003DMT400032621 | Potato | nucleus | 29.23 | 34.02 |
| KRH57258 | Soybean | nucleus | 30.28 | 33.86 |
| KRH03987 | Soybean | nucleus | 29.93 | 33.33 |
| Solyc08g007830.1.1 | Tomato | nucleus | 25.7 | 31.88 |
| Bra010461.1-P | Field mustard | nucleus | 28.52 | 31.4 |
| CDY52358 | Canola | nucleus | 20.42 | 30.69 |
| CDY66013 | Canola | nucleus | 20.42 | 30.37 |
| PGSC0003DMT400032623 | Potato | nucleus | 25.7 | 29.32 |
| Bra010460.1-P | Field mustard | nucleus | 28.17 | 29.09 |
| Bra010463.1-P | Field mustard | nucleus | 21.83 | 27.68 |
| PGSC0003DMT400006896 | Potato | cytosol | 13.03 | 27.61 |
| PGSC0003DMT400090651 | Potato | nucleus | 29.23 | 25.23 |
| KRH38616 | Soybean | plastid | 28.87 | 25.08 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A287RZ53 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G080420 | EnsemblPlants:HORVU5Hr1G080420.1 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 |
| PANTHER:PTHR31839:SF5 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B488F00 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr5H:-:560569797..560571193
Molecular Weight (calculated)
30036.2 Da
IEP (calculated)
6.938
GRAVY (calculated)
-0.285
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: KKSSHTPQSS VSSSTMLRLF KKEAACQSPS TLPVAMDMGL EVSSSSPSSS SVSSSPEHAA RRASPAKRPA GRTKFRETRH PVYRGVRRRG NTERWVCEVR
101: VPGKRGARLW LGTYATAEVA ARANDAAMLA LGGRSATCLN FADSAWLLAV PSALSDLADV RRAAVEAVAD FQRREAADGS LAIAVPKEAS SGAPSLSPSS
201: GSDSAGSTGT SEPSANGVFE GPVVMDSEMF RLDLFPEMDL GSYYMSLAEA LLMDPPPTAT IIHAYEDNGD GGADVRLWSY SVDM
101: VPGKRGARLW LGTYATAEVA ARANDAAMLA LGGRSATCLN FADSAWLLAV PSALSDLADV RRAAVEAVAD FQRREAADGS LAIAVPKEAS SGAPSLSPSS
201: GSDSAGSTGT SEPSANGVFE GPVVMDSEMF RLDLFPEMDL GSYYMSLAEA LLMDPPPTAT IIHAYEDNGD GGADVRLWSY SVDM
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.