Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G310700.1 | Wheat | nucleus | 85.78 | 86.94 |
| TraesCS1B01G335100.1 | Wheat | nucleus | 84.44 | 85.59 |
| TraesCS5B01G311400.1 | Wheat | nucleus | 83.56 | 84.68 |
| TraesCS5D01G317600.1 | Wheat | nucleus, plastid | 74.67 | 75.34 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 64.44 | 67.76 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 83.56 | 64.6 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 58.22 | 59.28 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 57.33 | 57.59 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 28.0 | 47.01 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 41.78 | 43.32 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 43.56 | 42.06 |
| Solyc03g026270.1.1 | Tomato | nucleus | 37.33 | 40.98 |
| AT1G63030.2 | Thale cress | nucleus | 32.89 | 40.88 |
| Bra027612.1-P | Field mustard | nucleus | 32.89 | 40.0 |
| CDY49205 | Canola | nucleus | 32.89 | 40.0 |
| PGSC0003DMT400037122 | Potato | nucleus | 38.22 | 39.63 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 39.56 | 39.56 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 39.11 | 39.29 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 42.67 | 39.18 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 41.78 | 39.0 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.0 | 38.57 |
| KRH35383 | Soybean | nucleus | 35.11 | 38.54 |
| KRG91437 | Soybean | nucleus | 35.11 | 38.16 |
| CDY71145 | Canola | nucleus | 34.22 | 38.12 |
| Bra016763.1-P | Field mustard | nucleus | 34.22 | 38.12 |
| AT4G25490.1 | Thale cress | nucleus | 36.0 | 38.03 |
| AT4G25480.1 | Thale cress | nucleus | 36.44 | 37.96 |
| CDX84868 | Canola | nucleus | 36.0 | 37.85 |
| CDY66018 | Canola | nucleus | 36.0 | 37.85 |
| Bra022770.1-P | Field mustard | nucleus | 36.0 | 37.85 |
| CDX92710 | Canola | nucleus | 36.0 | 37.67 |
| Bra019162.1-P | Field mustard | nucleus | 35.56 | 37.38 |
| CDY70584 | Canola | nucleus | 35.56 | 37.38 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 17.33 | 37.14 |
| Bra019777.1-P | Field mustard | nucleus | 33.78 | 36.89 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.0 | 36.89 |
| CDY52356 | Canola | nucleus | 35.56 | 36.87 |
| CDY00510 | Canola | nucleus | 36.0 | 36.82 |
| Bra028290.1-P | Field mustard | nucleus | 36.0 | 36.82 |
| CDY16016 | Canola | nucleus | 32.89 | 36.82 |
| CDY57075 | Canola | nucleus | 33.78 | 36.72 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 35.56 | 36.7 |
| CDY31270 | Canola | nucleus | 32.89 | 36.63 |
| AT5G51990.1 | Thale cress | nucleus | 36.44 | 36.61 |
| AT4G25470.1 | Thale cress | nucleus | 35.11 | 36.57 |
| AT1G12610.1 | Thale cress | nucleus | 33.78 | 36.36 |
| CDY31925 | Canola | nucleus | 35.56 | 36.36 |
| CDY52360 | Canola | nucleus | 35.56 | 36.2 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 53.78 | 36.12 |
| CDY65499 | Canola | nucleus | 34.67 | 36.11 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 32.89 | 36.1 |
| Bra026963.1-P | Field mustard | nucleus | 32.89 | 36.1 |
| CDY26574 | Canola | nucleus | 32.89 | 36.1 |
| Solyc03g124110.1.1 | Tomato | nucleus | 34.67 | 35.45 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.56 | 34.98 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 36.44 | 34.89 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 41.33 | 34.7 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 43.56 | 34.51 |
| PGSC0003DMT400010876 | Potato | nucleus | 31.56 | 34.3 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.11 | 33.08 |
| PGSC0003DMT400037120 | Potato | nucleus | 34.67 | 33.05 |
| KRH77483 | Soybean | nucleus | 32.89 | 32.74 |
| KRH09144 | Soybean | nucleus | 33.33 | 32.47 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 42.67 | 31.89 |
| Solyc08g007830.1.1 | Tomato | nucleus | 32.44 | 31.88 |
| PGSC0003DMT400037121 | Potato | nucleus | 36.44 | 31.78 |
| PGSC0003DMT400032622 | Potato | nucleus | 33.33 | 31.51 |
| KRH57258 | Soybean | nucleus | 35.56 | 31.5 |
| CDY52358 | Canola | nucleus | 26.22 | 31.22 |
| PGSC0003DMT400032621 | Potato | nucleus | 33.78 | 31.15 |
| CDY66013 | Canola | nucleus | 26.22 | 30.89 |
| Bra010461.1-P | Field mustard | nucleus | 35.11 | 30.62 |
| Solyc08g007820.1.1 | Tomato | nucleus | 32.89 | 30.33 |
| KRH03987 | Soybean | nucleus | 33.33 | 29.41 |
| PGSC0003DMT400032623 | Potato | nucleus | 32.44 | 29.32 |
| Bra010460.1-P | Field mustard | nucleus | 35.11 | 28.73 |
| Bra010463.1-P | Field mustard | nucleus | 26.67 | 26.79 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.11 | 25.37 |
| PGSC0003DMT400090651 | Potato | nucleus | 35.11 | 24.01 |
| KRH38616 | Soybean | plastid | 34.67 | 23.85 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | ProteinID:AAX23695.1 | ProteinID:ABE02625.1 | ProteinID:ABE02648.1 | ProteinID:ABE27175.1 |
| ProteinID:ABF18982.1 | EMBL:AF298230 | ProteinID:AGW47703.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EMBL:AY785848 |
| EMBL:AY785849 | EMBL:AY785850 | EMBL:AY785853 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G080300 | EnsemblPlants:HORVU5Hr1G080300.1 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | UniProt:Q9AXQ1 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI00000A5E87 | SEG:seg | : | : | : |
Description
CBF protein 4; CRT/DRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:Q9AXQ1]
Coordinates
chrchr5H:+:559672546..559673760
Molecular Weight (calculated)
24551.2 Da
IEP (calculated)
8.333
GRAVY (calculated)
-0.254
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVADIASPS GQQKQQGHRT VSSEPPKRPA GRTKFHETRH PLYRGVRRRG RVGQWVCEVR VPGIKGSRLW LGTFTNPEMA ARAHDAAVLA LSGRAACLNF
101: ADSAWRMRPV LATTGSFGFS STREIKLAVA VAVVAFQQQQ IILPVACPSP EAPASPSAAL FYISSGDLLE LDEEQWFGGM DAGSYYASLA QGMLVAPPDE
201: RARPENREHS GVETPIPLWS YLFDC
101: ADSAWRMRPV LATTGSFGFS STREIKLAVA VAVVAFQQQQ IILPVACPSP EAPASPSAAL FYISSGDLLE LDEEQWFGGM DAGSYYASLA QGMLVAPPDE
201: RARPENREHS GVETPIPLWS YLFDC
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.