Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G311400.1 | Wheat | nucleus | 95.05 | 95.05 |
| TraesCS5A01G310700.1 | Wheat | nucleus | 91.89 | 91.89 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 85.59 | 84.44 |
| TraesCS5D01G317600.1 | Wheat | nucleus, plastid | 80.63 | 80.27 |
| TraesCS5B01G310900.1 | Wheat | nucleus | 63.06 | 80.0 |
| TraesCS5B01G312000.1 | Wheat | nucleus | 68.02 | 70.56 |
| TraesCS5B01G311500.1 | Wheat | nucleus | 66.67 | 69.81 |
| TraesCS5B01G310800.1 | Wheat | nucleus | 84.23 | 69.52 |
| TraesCS5B01G311600.1 | Wheat | nucleus | 63.06 | 69.31 |
| TraesCS5B01G311700.1 | Wheat | nucleus | 61.71 | 62.27 |
| TraesCS5B01G311200.1 | Wheat | nucleus | 59.91 | 58.59 |
| TraesCS5B01G311300.1 | Wheat | nucleus | 65.77 | 50.34 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 43.24 | 44.24 |
| TraesCS5B01G312300.1 | Wheat | nucleus | 44.59 | 42.49 |
| AT1G63030.2 | Thale cress | nucleus | 34.23 | 41.99 |
| TraesCS5B01G311900.1 | Wheat | plastid | 44.14 | 41.88 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 44.14 | 41.53 |
| TraesCS6B01G420100.1 | Wheat | nucleus | 45.5 | 41.22 |
| Bra027612.1-P | Field mustard | nucleus | 34.23 | 41.08 |
| CDY49205 | Canola | nucleus | 34.23 | 41.08 |
| Solyc03g026270.1.1 | Tomato | nucleus | 37.84 | 40.98 |
| TraesCS6B01G218000.1 | Wheat | plastid | 44.59 | 40.57 |
| PGSC0003DMT400037122 | Potato | nucleus | 39.19 | 40.09 |
| KRH35383 | Soybean | nucleus | 36.94 | 40.0 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 38.29 | 39.91 |
| TraesCS5B01G312100.1 | Wheat | nucleus, plastid | 42.79 | 39.75 |
| KRG91437 | Soybean | nucleus | 36.94 | 39.61 |
| TraesCS5B01G312800.1 | Wheat | plastid | 42.79 | 39.58 |
| AT4G25490.1 | Thale cress | nucleus | 37.84 | 39.44 |
| TraesCS5B01G312200.1 | Wheat | nucleus | 43.24 | 39.18 |
| TraesCS5B01G312700.1 | Wheat | nucleus | 42.79 | 39.09 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.94 | 39.05 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 33.33 | 38.95 |
| Bra016763.1-P | Field mustard | nucleus | 35.14 | 38.61 |
| CDY71145 | Canola | nucleus | 35.14 | 38.61 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 37.84 | 38.53 |
| AT4G25480.1 | Thale cress | nucleus | 37.39 | 38.43 |
| CDY66018 | Canola | nucleus | 36.94 | 38.32 |
| CDX84868 | Canola | nucleus | 36.94 | 38.32 |
| Bra022770.1-P | Field mustard | nucleus | 36.94 | 38.32 |
| CDY52356 | Canola | nucleus | 37.39 | 38.25 |
| CDX92710 | Canola | nucleus | 36.94 | 38.14 |
| TraesCS5B01G312900.1 | Wheat | nucleus | 41.89 | 38.11 |
| AT4G25470.1 | Thale cress | nucleus | 36.94 | 37.96 |
| Bra019162.1-P | Field mustard | nucleus | 36.49 | 37.85 |
| CDY70584 | Canola | nucleus | 36.49 | 37.85 |
| CDY16016 | Canola | nucleus | 34.23 | 37.81 |
| Bra028290.1-P | Field mustard | nucleus | 37.39 | 37.73 |
| CDY00510 | Canola | nucleus | 37.39 | 37.73 |
| CDY31270 | Canola | nucleus | 34.23 | 37.62 |
| AT5G51990.1 | Thale cress | nucleus | 37.84 | 37.5 |
| Bra019777.1-P | Field mustard | nucleus | 34.68 | 37.38 |
| CDY31925 | Canola | nucleus | 36.94 | 37.27 |
| CDY57075 | Canola | nucleus | 34.68 | 37.2 |
| CDY52360 | Canola | nucleus | 36.94 | 37.1 |
| Bra026963.1-P | Field mustard | nucleus | 34.23 | 37.07 |
| CDY26574 | Canola | nucleus | 34.23 | 37.07 |
| AT1G12610.1 | Thale cress | nucleus | 34.68 | 36.84 |
| CDY65499 | Canola | nucleus | 35.59 | 36.57 |
| Solyc03g124110.1.1 | Tomato | nucleus | 36.04 | 36.36 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 54.5 | 36.12 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 37.84 | 35.74 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 19.37 | 35.25 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.98 | 34.98 |
| PGSC0003DMT400010876 | Potato | nucleus | 31.98 | 34.3 |
| PGSC0003DMT400037120 | Potato | nucleus | 35.59 | 33.47 |
| KRH09144 | Soybean | nucleus | 34.68 | 33.33 |
| KRH77483 | Soybean | nucleus | 33.78 | 33.19 |
| CDY52358 | Canola | nucleus | 27.48 | 32.28 |
| PGSC0003DMT400037121 | Potato | nucleus | 37.39 | 32.17 |
| CDY66013 | Canola | nucleus | 27.48 | 31.94 |
| Solyc08g007830.1.1 | Tomato | nucleus | 32.88 | 31.88 |
| Bra010461.1-P | Field mustard | nucleus | 36.94 | 31.78 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.47 | 31.54 |
| PGSC0003DMT400032622 | Potato | nucleus | 33.78 | 31.51 |
| KRH57258 | Soybean | nucleus | 36.04 | 31.5 |
| PGSC0003DMT400032621 | Potato | nucleus | 34.23 | 31.15 |
| Solyc08g007820.1.1 | Tomato | nucleus | 33.33 | 30.33 |
| KRH03987 | Soybean | nucleus | 34.68 | 30.2 |
| Bra010460.1-P | Field mustard | nucleus | 36.49 | 29.45 |
| PGSC0003DMT400032623 | Potato | nucleus | 32.88 | 29.32 |
| Bra010463.1-P | Field mustard | nucleus | 27.93 | 27.68 |
| PGSC0003DMT400006896 | Potato | cytosol | 16.22 | 26.87 |
| KRH38616 | Soybean | plastid | 36.04 | 24.46 |
| PGSC0003DMT400090651 | Potato | nucleus | 35.59 | 24.01 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1B01G335100 | EnsemblPlants:TraesCS1B01G335100.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:-:562432709..562433929
Molecular Weight (calculated)
24393.7 Da
IEP (calculated)
7.045
GRAVY (calculated)
-0.371
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVADAASRS SQQEQGHRTV SSEPPKRPAG RTKFHETRHP LYRGVRRRGR VGQWVCEVRV PRVKGSRLWL GTFTTAEMAA RAHDAAVLAL SGRAACLNFA
101: DSAWRMLPVL AAGSFGFRSA REIKLAVAVA VVAFQQQQNI PPAACPTAEP AASPSNSLFY MSSGDLLELD EEHWFGGMDA GSYYDSLAQG MLVEPPDDRA
201: RREDVEQTGV ETPTPLWSYL FD
101: DSAWRMLPVL AAGSFGFRSA REIKLAVAVA VVAFQQQQNI PPAACPTAEP AASPSNSLFY MSSGDLLELD EEHWFGGMDA GSYYDSLAQG MLVEPPDDRA
201: RREDVEQTGV ETPTPLWSYL FD
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.