Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G312900.1 | Wheat | nucleus | 94.17 | 92.62 |
| TraesCS5D01G318800.1 | Wheat | nucleus, plastid | 91.67 | 91.67 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 89.58 | 89.21 |
| TraesCS5B01G312700.1 | Wheat | nucleus | 79.17 | 78.19 |
| TraesCS5B01G312300.1 | Wheat | nucleus | 60.83 | 62.66 |
| TraesCS6B01G218000.1 | Wheat | plastid | 61.67 | 60.66 |
| TraesCS6B01G420100.1 | Wheat | nucleus | 61.25 | 60.0 |
| TraesCS5B01G312100.1 | Wheat | nucleus, plastid | 58.33 | 58.58 |
| TraesCS5B01G311900.1 | Wheat | plastid | 55.83 | 57.27 |
| Os09t0522100-00 | Rice | nucleus | 58.33 | 56.91 |
| TraesCS5B01G312200.1 | Wheat | nucleus | 54.17 | 53.06 |
| Zm00001d021205_P001 | Maize | plastid | 53.75 | 52.44 |
| Zm00001d006169_P001 | Maize | plastid | 56.67 | 51.52 |
| EER99211 | Sorghum | plastid | 57.5 | 50.18 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 49.17 | 50.0 |
| TraesCS5B01G312000.1 | Wheat | nucleus | 40.42 | 45.33 |
| TraesCS5B01G310900.1 | Wheat | nucleus | 31.67 | 43.43 |
| TraesCS5B01G311400.1 | Wheat | nucleus | 40.0 | 43.24 |
| TraesCS1B01G335100.1 | Wheat | nucleus | 39.58 | 42.79 |
| TraesCS5B01G311600.1 | Wheat | nucleus | 35.83 | 42.57 |
| TraesCS5B01G311500.1 | Wheat | nucleus | 37.08 | 41.98 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.67 | 41.9 |
| AT1G63030.2 | Thale cress | nucleus | 31.25 | 41.44 |
| CDY49205 | Canola | nucleus | 31.67 | 41.08 |
| Bra027612.1-P | Field mustard | nucleus | 31.67 | 41.08 |
| TraesCS5B01G311700.1 | Wheat | nucleus | 36.67 | 40.0 |
| Solyc03g026270.1.1 | Tomato | nucleus | 34.17 | 40.0 |
| PGSC0003DMT400037122 | Potato | nucleus | 35.42 | 39.17 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 35.0 | 38.71 |
| KRH35383 | Soybean | nucleus | 32.92 | 38.54 |
| Solyc03g124110.1.1 | Tomato | nucleus | 35.0 | 38.18 |
| KRG91437 | Soybean | nucleus | 32.92 | 38.16 |
| CDX92710 | Canola | nucleus | 34.17 | 38.14 |
| CDY71145 | Canola | nucleus | 32.08 | 38.12 |
| Bra016763.1-P | Field mustard | nucleus | 32.08 | 38.12 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 30.0 | 37.89 |
| CDY70584 | Canola | nucleus | 33.75 | 37.85 |
| Bra019162.1-P | Field mustard | nucleus | 33.75 | 37.85 |
| CDY16016 | Canola | nucleus | 31.67 | 37.81 |
| CDY31270 | Canola | nucleus | 31.67 | 37.62 |
| Bra026963.1-P | Field mustard | nucleus | 31.67 | 37.07 |
| CDY26574 | Canola | nucleus | 31.67 | 37.07 |
| TraesCS5B01G311200.1 | Wheat | nucleus | 35.0 | 37.0 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.25 | 36.95 |
| CDX84868 | Canola | nucleus | 32.92 | 36.92 |
| Bra022770.1-P | Field mustard | nucleus | 32.92 | 36.92 |
| CDY66018 | Canola | nucleus | 32.92 | 36.92 |
| Bra019777.1-P | Field mustard | nucleus | 31.67 | 36.89 |
| CDY52356 | Canola | nucleus | 33.33 | 36.87 |
| CDY57075 | Canola | nucleus | 31.67 | 36.72 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 33.33 | 36.7 |
| AT4G25490.1 | Thale cress | nucleus | 32.5 | 36.62 |
| PGSC0003DMT400010876 | Potato | nucleus | 31.25 | 36.23 |
| AT1G12610.1 | Thale cress | nucleus | 31.25 | 35.89 |
| TraesCS5B01G310800.1 | Wheat | nucleus | 40.0 | 35.69 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 34.58 | 35.32 |
| PGSC0003DMT400032622 | Potato | nucleus | 35.0 | 35.29 |
| CDY52360 | Canola | nucleus | 32.5 | 35.29 |
| AT4G25470.1 | Thale cress | nucleus | 31.67 | 35.19 |
| Bra028290.1-P | Field mustard | nucleus | 32.08 | 35.0 |
| CDY00510 | Canola | nucleus | 32.08 | 35.0 |
| PGSC0003DMT400037121 | Potato | nucleus | 37.5 | 34.88 |
| PGSC0003DMT400037120 | Potato | nucleus | 34.17 | 34.75 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 30.83 | 34.74 |
| CDY65499 | Canola | nucleus | 31.25 | 34.72 |
| AT4G25480.1 | Thale cress | nucleus | 31.25 | 34.72 |
| KRH09144 | Soybean | nucleus | 33.33 | 34.63 |
| CDY31925 | Canola | nucleus | 31.67 | 34.55 |
| PGSC0003DMT400032621 | Potato | nucleus | 35.0 | 34.43 |
| KRH77483 | Soybean | nucleus | 32.08 | 34.07 |
| Solyc08g007820.1.1 | Tomato | nucleus | 34.58 | 34.02 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.33 | 33.85 |
| AT5G51990.1 | Thale cress | nucleus | 31.25 | 33.48 |
| KRH57258 | Soybean | nucleus | 35.42 | 33.46 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 16.67 | 32.79 |
| KRH03987 | Soybean | nucleus | 33.75 | 31.76 |
| Solyc08g007830.1.1 | Tomato | nucleus | 30.0 | 31.44 |
| CDY52358 | Canola | nucleus | 24.58 | 31.22 |
| Bra010461.1-P | Field mustard | nucleus | 33.33 | 31.01 |
| CDY66013 | Canola | nucleus | 24.17 | 30.37 |
| TraesCS5B01G311300.1 | Wheat | nucleus | 34.58 | 28.62 |
| PGSC0003DMT400032623 | Potato | nucleus | 29.17 | 28.11 |
| Bra010460.1-P | Field mustard | nucleus | 32.08 | 28.0 |
| Bra010463.1-P | Field mustard | nucleus | 25.83 | 27.68 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.42 | 27.61 |
| KRH38616 | Soybean | plastid | 32.5 | 23.85 |
| PGSC0003DMT400090651 | Potato | nucleus | 32.5 | 23.71 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF5 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5B01G312800 | EnsemblPlants:TraesCS5B01G312800.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:-:494044481..494045581
Molecular Weight (calculated)
25125.1 Da
IEP (calculated)
4.516
GRAVY (calculated)
-0.261
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMGLEVSSS SPSSSSLAKR PAGRTKFRET RHPVYRGVRR RGNAQRWVCE VRVPGKRGAR LWLGTYATAE IAARANDAAM LALGGRSAAL LNFPDSAWLL
101: AVPSAHSDLA DVRRAAVEAV ADLQRREAAG GSITATATAT AAEEASCGAP AESSSESDDA GSSETSKPSA DGDFAVPGGM DIEMFSRLDL FPEMDLGSYY
201: ASLAEALLMD PPPVATGTGA YWDNGECGEA EGATEFALWS
101: AVPSAHSDLA DVRRAAVEAV ADLQRREAAG GSITATATAT AAEEASCGAP AESSSESDDA GSSETSKPSA DGDFAVPGGM DIEMFSRLDL FPEMDLGSYY
201: ASLAEALLMD PPPVATGTGA YWDNGECGEA EGATEFALWS
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.