Factsheet for TraesCS5B01G312900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G312800.1	Wheat	plastid	92.62	94.17
TraesCS5A01G311900.1	Wheat	nucleus	91.8	93.72
HORVU5Hr1G080430.1	Barley	nucleus	89.34	90.46
TraesCS5B01G312700.1	Wheat	nucleus	77.46	77.78
TraesCS5B01G312300.1	Wheat	nucleus	58.2	60.94
TraesCS6B01G218000.1	Wheat	plastid	58.2	58.2
TraesCS6B01G420100.1	Wheat	nucleus	58.2	57.96
TraesCS5B01G312100.1	Wheat	nucleus, plastid	55.74	56.9
TraesCS5B01G311900.1	Wheat	plastid	54.1	56.41
Os09t0522100-00	Rice	nucleus	55.33	54.88
TraesCS5B01G312200.1	Wheat	nucleus	52.87	52.65
Zm00001d021205_P001	Maize	plastid	52.46	52.03
Zm00001d006169_P001	Maize	plastid	54.51	50.38
TraesCS5B01G313000.1	Wheat	nucleus	48.36	50.0
EER99211	Sorghum	plastid	55.33	49.09
TraesCS5B01G312000.1	Wheat	nucleus	39.34	44.86
TraesCS5B01G310900.1	Wheat	nucleus	31.15	43.43
TraesCS5B01G311400.1	Wheat	nucleus	38.52	42.34
TraesCS5B01G311600.1	Wheat	nucleus	34.84	42.08
TraesCS1B01G335100.1	Wheat	nucleus	38.11	41.89
TraesCS5B01G311500.1	Wheat	nucleus	36.07	41.51
AT1G63030.2	Thale cress	nucleus	30.74	41.44
Solyc03g026280.2.1	Tomato	nucleus	35.66	41.43
CDY49205	Canola	nucleus	31.15	41.08
Bra027612.1-P	Field mustard	nucleus	31.15	41.08
Solyc03g026270.1.1	Tomato	nucleus	33.2	39.51
KRH35383	Soybean	nucleus	33.2	39.51
TraesCS5B01G311700.1	Wheat	nucleus	35.25	39.09
PGSC0003DMT400037122	Potato	nucleus	34.43	38.71
KRG91437	Soybean	nucleus	32.79	38.65
TraesCS6B01G268100.1	Wheat	nucleus	34.02	38.25
CDX92710	Canola	nucleus	33.61	38.14
Bra019162.1-P	Field mustard	nucleus	33.2	37.85
CDY70584	Canola	nucleus	33.2	37.85
Bra016763.1-P	Field mustard	nucleus	31.15	37.62
CDY31270	Canola	nucleus	31.15	37.62
CDY71145	Canola	nucleus	31.15	37.62
TraesCS2B01G002700.1	Wheat	nucleus, plastid	29.1	37.37
CDY16016	Canola	nucleus	30.74	37.31
Solyc03g124110.1.1	Tomato	nucleus	33.61	37.27
VIT_16s0100g00380.t01	Wine grape	nucleus	33.2	37.16
CDX84868	Canola	nucleus	32.38	36.92
Bra022770.1-P	Field mustard	nucleus	32.38	36.92
CDY66018	Canola	nucleus	32.38	36.92
Bra019777.1-P	Field mustard	nucleus	31.15	36.89
CDY52356	Canola	nucleus	32.79	36.87
AT4G25490.1	Thale cress	nucleus	31.97	36.62
Bra026963.1-P	Field mustard	nucleus	30.74	36.59
CDY26574	Canola	nucleus	30.74	36.59
Solyc12g056430.1.1	Tomato	nucleus	30.33	36.45
CDY57075	Canola	nucleus	30.74	36.23
PGSC0003DMT400010876	Potato	nucleus	30.74	36.23
TraesCS5B01G311200.1	Wheat	nucleus	33.61	36.12
AT1G12610.1	Thale cress	nucleus	30.74	35.89
VIT_02s0025g04460.t01	Wine grape	nucleus	34.02	35.32
CDY52360	Canola	nucleus	31.97	35.29
AT4G25470.1	Thale cress	nucleus	31.15	35.19
PGSC0003DMT400037120	Potato	nucleus	34.02	35.17
KRH09144	Soybean	nucleus	33.2	35.06
TraesCS5B01G310800.1	Wheat	nucleus	38.52	34.94
PGSC0003DMT400032622	Potato	nucleus	34.02	34.87
TraesCS2B01G417500.1	Wheat	nucleus	30.33	34.74
AT4G25480.1	Thale cress	nucleus	30.74	34.72
CDY65499	Canola	nucleus	30.74	34.72
CDY00510	Canola	nucleus	31.15	34.55
Bra028290.1-P	Field mustard	nucleus	31.15	34.55
KRH77483	Soybean	nucleus	31.97	34.51
PGSC0003DMT400037121	Potato	nucleus	36.48	34.5
CDY31925	Canola	nucleus	30.74	34.09
PGSC0003DMT400032621	Potato	nucleus	34.02	34.02
PGSC0003DMT400037118	Potato	mitochondrion	18.03	33.85
Solyc08g007820.1.1	Tomato	nucleus	33.61	33.61
AT5G51990.1	Thale cress	nucleus	30.74	33.48
PGSC0003DMT400037119	Potato	mitochondrion	16.39	32.79
KRH57258	Soybean	nucleus	34.02	32.68
Solyc08g007830.1.1	Tomato	nucleus	29.51	31.44
CDY52358	Canola	nucleus	24.18	31.22
Bra010461.1-P	Field mustard	nucleus	32.79	31.01
KRH03987	Soybean	nucleus	32.38	30.98
CDY66013	Canola	nucleus	23.77	30.37
PGSC0003DMT400032623	Potato	nucleus	28.69	28.11
Bra010460.1-P	Field mustard	nucleus	31.56	28.0
TraesCS5B01G311300.1	Wheat	nucleus	33.2	27.93
PGSC0003DMT400006896	Potato	cytosol	15.16	27.61
Bra010463.1-P	Field mustard	nucleus	25.0	27.23
KRH38616	Soybean	plastid	32.38	24.16
PGSC0003DMT400090651	Potato	nucleus	32.38	24.01

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF5	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5B01G312900	EnsemblPlants:TraesCS5B01G312900.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:494295889..494296623

Molecular Weight (calculated)

25620.7 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.358

Length

244 amino acids

Sequence
(BLAST)

001: MGMGLEIPSS SLSSSNENAP GRASAAKRPA GRTKFRETRH PVYRGVRRRG NAERWVCEVR VPGKRGARLW LGTYATAEIA ARANDAAMLA LGGRSAARLN
101: FPDSAWLLAV PSAHSDLADV RRAAVEAVAD LQRREAAGGS ITATAAEEAS CGAPAESSSE SDDAGSSETS KPSAHGDFAV PGGMDIEMFS RHDLFPEMDL
201: GSYYASLAEA LLMDPPPVAT GTGAYWDNGE CGEAEGATEF ALWS

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.