Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G311900.1 | Wheat | nucleus | 89.21 | 89.96 |
| TraesCS5B01G312800.1 | Wheat | plastid | 89.21 | 89.58 |
| TraesCS5B01G312900.1 | Wheat | nucleus | 90.46 | 89.34 |
| TraesCS5D01G318800.1 | Wheat | nucleus, plastid | 88.38 | 88.75 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 76.76 | 65.14 |
| Os09t0522100-00 | Rice | nucleus | 57.26 | 56.1 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 51.45 | 55.36 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 56.02 | 55.1 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 53.11 | 54.94 |
| Zm00001d021205_P001 | Maize | plastid | 52.7 | 51.63 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 56.85 | 51.12 |
| Zm00001d006169_P001 | Maize | plastid | 55.19 | 50.38 |
| EER99211 | Sorghum | plastid | 56.02 | 49.09 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 25.31 | 45.52 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 37.76 | 42.52 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.93 | 42.38 |
| AT1G63030.2 | Thale cress | nucleus | 31.54 | 41.99 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 18.26 | 41.9 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 39.0 | 41.78 |
| CDY49205 | Canola | nucleus | 31.54 | 41.08 |
| Bra027612.1-P | Field mustard | nucleus | 31.54 | 41.08 |
| Solyc03g026270.1.1 | Tomato | nucleus | 34.44 | 40.49 |
| KRH35383 | Soybean | nucleus | 34.44 | 40.49 |
| PGSC0003DMT400037122 | Potato | nucleus | 36.1 | 40.09 |
| KRG91437 | Soybean | nucleus | 34.02 | 39.61 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 36.51 | 39.29 |
| CDX92710 | Canola | nucleus | 34.85 | 39.07 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 35.68 | 38.91 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 48.55 | 38.87 |
| Solyc03g124110.1.1 | Tomato | nucleus | 35.27 | 38.64 |
| CDY71145 | Canola | nucleus | 32.37 | 38.61 |
| Bra016763.1-P | Field mustard | nucleus | 32.37 | 38.61 |
| Bra019777.1-P | Field mustard | nucleus | 32.78 | 38.35 |
| CDY16016 | Canola | nucleus | 31.95 | 38.31 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 34.44 | 38.25 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 34.44 | 38.07 |
| CDX84868 | Canola | nucleus | 33.61 | 37.85 |
| Bra022770.1-P | Field mustard | nucleus | 33.61 | 37.85 |
| Bra019162.1-P | Field mustard | nucleus | 33.61 | 37.85 |
| CDY70584 | Canola | nucleus | 33.61 | 37.85 |
| CDY66018 | Canola | nucleus | 33.61 | 37.85 |
| CDY57075 | Canola | nucleus | 32.37 | 37.68 |
| CDY31270 | Canola | nucleus | 31.54 | 37.62 |
| Bra026963.1-P | Field mustard | nucleus | 31.95 | 37.56 |
| CDY26574 | Canola | nucleus | 31.95 | 37.56 |
| AT4G25490.1 | Thale cress | nucleus | 33.2 | 37.56 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.54 | 37.44 |
| CDY52356 | Canola | nucleus | 33.61 | 37.33 |
| AT1G12610.1 | Thale cress | nucleus | 32.37 | 37.32 |
| PGSC0003DMT400010876 | Potato | nucleus | 31.54 | 36.72 |
| Bra028290.1-P | Field mustard | nucleus | 33.2 | 36.36 |
| CDY00510 | Canola | nucleus | 33.2 | 36.36 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 35.27 | 36.17 |
| AT4G25470.1 | Thale cress | nucleus | 31.95 | 35.65 |
| AT4G25480.1 | Thale cress | nucleus | 31.95 | 35.65 |
| PGSC0003DMT400037120 | Potato | nucleus | 34.85 | 35.59 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.09 | 35.38 |
| CDY52360 | Canola | nucleus | 32.37 | 35.29 |
| PGSC0003DMT400037121 | Potato | nucleus | 37.76 | 35.27 |
| CDY65499 | Canola | nucleus | 31.54 | 35.19 |
| CDY31925 | Canola | nucleus | 31.95 | 35.0 |
| KRH09144 | Soybean | nucleus | 33.2 | 34.63 |
| PGSC0003DMT400032622 | Potato | nucleus | 34.02 | 34.45 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 17.43 | 34.43 |
| AT5G51990.1 | Thale cress | nucleus | 31.95 | 34.38 |
| KRH77483 | Soybean | nucleus | 31.95 | 34.07 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 31.54 | 33.78 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 40.66 | 33.68 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 28.63 | 33.66 |
| PGSC0003DMT400032621 | Potato | nucleus | 34.02 | 33.61 |
| Solyc08g007820.1.1 | Tomato | nucleus | 33.61 | 33.2 |
| CDY52358 | Canola | nucleus | 25.73 | 32.8 |
| KRH57258 | Soybean | nucleus | 34.44 | 32.68 |
| Bra010461.1-P | Field mustard | nucleus | 34.02 | 31.78 |
| CDY66013 | Canola | nucleus | 24.9 | 31.41 |
| KRH03987 | Soybean | nucleus | 32.78 | 30.98 |
| Solyc08g007830.1.1 | Tomato | nucleus | 29.05 | 30.57 |
| Bra010463.1-P | Field mustard | nucleus | 26.97 | 29.02 |
| PGSC0003DMT400032623 | Potato | nucleus | 29.05 | 28.11 |
| Bra010460.1-P | Field mustard | nucleus | 31.95 | 28.0 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.35 | 27.61 |
| PGSC0003DMT400090651 | Potato | nucleus | 33.61 | 24.62 |
| KRH38616 | Soybean | plastid | 32.37 | 23.85 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | ProteinID:AAX23710.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G080430 | EnsemblPlants:HORVU5Hr1G080430.1 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 |
| PANTHER:PTHR31839:SF5 | UniProt:Q2VUB9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00006629F2 | SEG:seg |
Description
HvCBF10A [Source:UniProtKB/TrEMBL;Acc:Q2VUB9]
Coordinates
chrchr5H:-:560586710..560588220
Molecular Weight (calculated)
25570.6 Da
IEP (calculated)
4.615
GRAVY (calculated)
-0.356
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMGLEVSSS PPSSSNENAS GRSSTAKRPA GRTKFRETRH PVYRGVRRRG NAERWVCEVR VPGKRGARLW LGTYATAEIA ARANDAAMLA LGGRSAARLN
101: FPDSAWLLAV PSAHSDLADV RRAAVEAVAD LQRREAAGGS ISATVDEEAS CGAPAESSSE SDGAGSSETS KPSADGDLAV PVGMDIEMFR LDFFPEMEFG
201: SYYASLAEAL LMDPPPVANS TGAYWDNGEF GEVATEFALW S
101: FPDSAWLLAV PSAHSDLADV RRAAVEAVAD LQRREAAGGS ISATVDEEAS CGAPAESSSE SDGAGSSETS KPSADGDLAV PVGMDIEMFR LDFFPEMEFG
201: SYYASLAEAL LMDPPPVANS TGAYWDNGEF GEVATEFALW S
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.