Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G015200.1 | Wheat | nucleus | 73.88 | 51.83 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 67.16 | 47.37 |
| Os06t0127100-01 | Rice | nucleus | 66.42 | 41.59 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 63.43 | 41.46 |
| Zm00001d036003_P001 | Maize | nucleus | 64.18 | 37.07 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 28.36 | 36.19 |
| KRH35383 | Soybean | nucleus | 54.48 | 35.61 |
| EER87753 | Sorghum | nucleus | 65.67 | 35.34 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 56.72 | 35.02 |
| KRG91437 | Soybean | nucleus | 52.99 | 34.3 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 55.22 | 33.95 |
| Solyc03g026270.1.1 | Tomato | nucleus | 50.75 | 33.17 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 55.22 | 32.89 |
| AT4G25490.1 | Thale cress | nucleus | 52.24 | 32.86 |
| AT1G63030.2 | Thale cress | nucleus | 44.03 | 32.6 |
| CDY65499 | Canola | nucleus | 51.49 | 31.94 |
| CDY52356 | Canola | nucleus | 51.49 | 31.8 |
| PGSC0003DMT400037122 | Potato | nucleus | 51.49 | 31.8 |
| AT4G25480.1 | Thale cress | nucleus | 50.75 | 31.48 |
| Bra019162.1-P | Field mustard | nucleus | 50.0 | 31.31 |
| CDY70584 | Canola | nucleus | 50.0 | 31.31 |
| CDY71145 | Canola | nucleus | 47.01 | 31.19 |
| Bra016763.1-P | Field mustard | nucleus | 47.01 | 31.19 |
| AT4G25470.1 | Thale cress | nucleus | 50.0 | 31.02 |
| Solyc03g026280.2.1 | Tomato | nucleus | 48.51 | 30.95 |
| Bra022770.1-P | Field mustard | nucleus | 49.25 | 30.84 |
| CDY66018 | Canola | nucleus | 49.25 | 30.84 |
| CDX84868 | Canola | nucleus | 49.25 | 30.84 |
| CDY52360 | Canola | nucleus | 50.75 | 30.77 |
| CDX92710 | Canola | nucleus | 49.25 | 30.7 |
| CDY57075 | Canola | nucleus | 47.01 | 30.43 |
| CDY16016 | Canola | nucleus | 45.52 | 30.35 |
| CDY49205 | Canola | nucleus | 41.79 | 30.27 |
| Bra027612.1-P | Field mustard | nucleus | 41.79 | 30.27 |
| CDY31270 | Canola | nucleus | 45.52 | 30.2 |
| Bra019777.1-P | Field mustard | nucleus | 46.27 | 30.1 |
| CDY00510 | Canola | nucleus | 49.25 | 30.0 |
| CDY31925 | Canola | nucleus | 49.25 | 30.0 |
| Bra028290.1-P | Field mustard | nucleus | 49.25 | 30.0 |
| CDY26574 | Canola | nucleus | 45.52 | 29.76 |
| Bra026963.1-P | Field mustard | nucleus | 45.52 | 29.76 |
| AT5G51990.1 | Thale cress | nucleus | 49.25 | 29.46 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 47.01 | 29.44 |
| Solyc03g124110.1.1 | Tomato | nucleus | 47.76 | 29.09 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 48.51 | 29.02 |
| KRH09144 | Soybean | nucleus | 50.0 | 29.0 |
| PGSC0003DMT400010876 | Potato | nucleus | 44.78 | 28.99 |
| AT1G12610.1 | Thale cress | nucleus | 44.78 | 28.71 |
| Solyc12g056430.1.1 | Tomato | nucleus | 43.28 | 28.57 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 50.0 | 28.51 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 47.01 | 28.0 |
| PGSC0003DMT400037120 | Potato | nucleus | 49.25 | 27.97 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 47.76 | 27.47 |
| KRH77483 | Soybean | nucleus | 46.27 | 27.43 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 44.78 | 27.15 |
| Solyc08g007830.1.1 | Tomato | nucleus | 46.27 | 27.07 |
| Bra010461.1-P | Field mustard | nucleus | 51.49 | 26.74 |
| PGSC0003DMT400037121 | Potato | nucleus | 51.49 | 26.74 |
| CDY52358 | Canola | nucleus | 37.31 | 26.45 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 44.03 | 26.34 |
| CDY66013 | Canola | nucleus | 37.31 | 26.18 |
| PGSC0003DMT400032622 | Potato | nucleus | 45.52 | 25.63 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 45.52 | 25.31 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 46.27 | 25.31 |
| Solyc08g007820.1.1 | Tomato | nucleus | 45.52 | 25.0 |
| KRH57258 | Soybean | nucleus | 47.01 | 24.8 |
| Bra010460.1-P | Field mustard | nucleus | 50.75 | 24.73 |
| KRH03987 | Soybean | nucleus | 47.01 | 24.71 |
| PGSC0003DMT400032621 | Potato | nucleus | 44.78 | 24.59 |
| PGSC0003DMT400032623 | Potato | nucleus | 45.52 | 24.5 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.9 | 22.95 |
| Bra010463.1-P | Field mustard | nucleus | 38.06 | 22.77 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 44.78 | 22.39 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 48.51 | 22.34 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 46.27 | 21.83 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 20.9 | 21.54 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 47.76 | 21.26 |
| KRH38616 | Soybean | plastid | 50.0 | 20.49 |
| PGSC0003DMT400090651 | Potato | nucleus | 45.52 | 18.54 |
| PGSC0003DMT400006896 | Potato | cytosol | 13.43 | 13.43 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A287QYC6 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G041600 |
| EnsemblPlants:HORVU5Hr1G041600.1 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF8 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B46511B |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:315965930..315966515
Molecular Weight (calculated)
14904.9 Da
IEP (calculated)
12.640
GRAVY (calculated)
-0.947
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQPGKGYAT VTTAPPKRPV GRTKFSETRH PVYRGVRRRA GRWVSEVREP NKKSRIWLGT FATTEAAARA HDVAALALRG RGACLNFADS ASQLAVARPR
101: SARPRTSATQ PSRSPSPGAP PRPRRPRPRR RLQR
101: SARPRTSATQ PSRSPSPGAP PRPRRPRPRR RLQR
001: MNSFSAFSEM FGSDYEPQGG DYCPTLATSC PKKPAGRKKF RETRHPIYRG VRQRNSGKWV SEVREPNKKT RIWLGTFQTA EMAARAHDVA ALALRGRSAC
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY
Arabidopsis Description
DREB1BDRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.