Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G256900.1 | Wheat | nucleus | 95.39 | 95.39 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 94.93 | 94.93 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 94.47 | 94.47 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 91.24 | 88.0 |
| Os02t0677300-02 | Rice | nucleus | 79.72 | 77.23 |
| Zm00001d017592_P001 | Maize | nucleus | 76.5 | 71.86 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 35.02 | 56.72 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 50.69 | 53.4 |
| KRG91437 | Soybean | nucleus | 47.0 | 49.28 |
| OQU85641 | Sorghum | nucleus | 74.65 | 48.65 |
| AT1G63030.2 | Thale cress | nucleus | 40.55 | 48.62 |
| KRH35383 | Soybean | nucleus | 45.16 | 47.8 |
| Bra028290.1-P | Field mustard | nucleus | 48.39 | 47.73 |
| CDY00510 | Canola | nucleus | 48.39 | 47.73 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 47.93 | 47.71 |
| CDX92710 | Canola | nucleus | 47.0 | 47.44 |
| AT4G25490.1 | Thale cress | nucleus | 46.54 | 47.42 |
| CDY31925 | Canola | nucleus | 47.47 | 46.82 |
| AT4G25480.1 | Thale cress | nucleus | 46.54 | 46.76 |
| Bra022770.1-P | Field mustard | nucleus | 46.08 | 46.73 |
| Bra019162.1-P | Field mustard | nucleus | 46.08 | 46.73 |
| CDY70584 | Canola | nucleus | 46.08 | 46.73 |
| CDX84868 | Canola | nucleus | 46.08 | 46.73 |
| CDY66018 | Canola | nucleus | 45.62 | 46.26 |
| AT5G51990.1 | Thale cress | nucleus | 47.47 | 45.98 |
| CDY49205 | Canola | nucleus | 38.71 | 45.41 |
| Bra027612.1-P | Field mustard | nucleus | 38.71 | 45.41 |
| AT4G25470.1 | Thale cress | nucleus | 45.16 | 45.37 |
| CDY16016 | Canola | nucleus | 41.94 | 45.27 |
| CDY71145 | Canola | nucleus | 41.94 | 45.05 |
| Bra016763.1-P | Field mustard | nucleus | 41.94 | 45.05 |
| CDY57075 | Canola | nucleus | 42.86 | 44.93 |
| Solyc03g026270.1.1 | Tomato | nucleus | 42.4 | 44.88 |
| CDY52356 | Canola | nucleus | 44.7 | 44.7 |
| PGSC0003DMT400037122 | Potato | nucleus | 44.7 | 44.7 |
| CDY31270 | Canola | nucleus | 41.47 | 44.55 |
| PGSC0003DMT400010876 | Potato | nucleus | 42.4 | 44.44 |
| CDY26574 | Canola | nucleus | 41.94 | 44.39 |
| Bra026963.1-P | Field mustard | nucleus | 41.94 | 44.39 |
| Bra019777.1-P | Field mustard | nucleus | 41.94 | 44.17 |
| CDY65499 | Canola | nucleus | 43.78 | 43.98 |
| CDY52360 | Canola | nucleus | 44.24 | 43.44 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 46.54 | 42.98 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 40.55 | 42.93 |
| Solyc12g056430.1.1 | Tomato | nucleus | 39.63 | 42.36 |
| AT1G12610.1 | Thale cress | nucleus | 40.55 | 42.11 |
| Solyc03g026280.2.1 | Tomato | nucleus | 40.55 | 41.9 |
| Solyc03g124110.1.1 | Tomato | nucleus | 42.4 | 41.82 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 43.32 | 41.78 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 42.4 | 41.63 |
| KRH09144 | Soybean | nucleus | 44.24 | 41.56 |
| KRH77483 | Soybean | nucleus | 42.86 | 41.15 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 40.55 | 41.12 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 23.04 | 40.98 |
| CDY66013 | Canola | nucleus | 35.94 | 40.84 |
| PGSC0003DMT400037120 | Potato | nucleus | 43.78 | 40.25 |
| CDY52358 | Canola | nucleus | 35.02 | 40.21 |
| Solyc08g007830.1.1 | Tomato | nucleus | 42.4 | 40.17 |
| PGSC0003DMT400032621 | Potato | nucleus | 45.16 | 40.16 |
| PGSC0003DMT400032622 | Potato | nucleus | 43.78 | 39.92 |
| Solyc08g007820.1.1 | Tomato | nucleus | 44.7 | 39.75 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 40.55 | 39.29 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 23.5 | 39.23 |
| PGSC0003DMT400032623 | Potato | nucleus | 44.7 | 38.96 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 41.47 | 38.63 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 17.97 | 37.14 |
| Bra010461.1-P | Field mustard | nucleus | 43.78 | 36.82 |
| PGSC0003DMT400037121 | Potato | nucleus | 43.78 | 36.82 |
| KRH57258 | Soybean | nucleus | 42.4 | 36.22 |
| KRH03987 | Soybean | nucleus | 42.4 | 36.08 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 40.55 | 35.92 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 52.53 | 35.85 |
| Bra010463.1-P | Field mustard | nucleus | 36.41 | 35.27 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 36.41 | 35.27 |
| Bra010460.1-P | Field mustard | nucleus | 44.24 | 34.91 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 38.25 | 34.44 |
| PGSC0003DMT400006896 | Potato | cytosol | 20.28 | 32.84 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 43.32 | 32.3 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 41.47 | 31.69 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 42.86 | 30.9 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 37.33 | 30.22 |
| KRH38616 | Soybean | plastid | 44.7 | 29.66 |
| PGSC0003DMT400090651 | Potato | nucleus | 40.09 | 26.44 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | ProteinID:AAX23683.1 | ProteinID:AAX23684.1 | ProteinID:AAX23685.1 | ProteinID:AAX23686.1 |
| EMBL:AF418204 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU0Hr1G016540 | EnsemblPlants:HORVU0Hr1G016540.1 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF20 | UniProt:Q8S4R3 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00000AB879 | SEG:seg | : | : |
Description
CBF protein 1 [Source:UniProtKB/TrEMBL;Acc:Q8S4R3]
Coordinates
chrchrUn:+:89030447..89031106
Molecular Weight (calculated)
23139.1 Da
IEP (calculated)
5.090
GRAVY (calculated)
-0.444
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVGALSSDY SSGTPSPVGA DGGNSEGFST YMTVSSAPPK RRAGRTKFKE TRHPVYKGVR RRNPGRWVCE VREPHSKQRI WLGTFETAEM AARAHDVAAL
101: ALRGRAACLN FADSPRRLRV PAVGASPDEI RRAAVEAAEA FLPAPDQSNA PAEEVAAAPT MQFAGDPYYG MDDGMDFGMQ GYLDMAQGML IAPPPLVGPS
201: ATAGDGDDDG EVSLWSY
101: ALRGRAACLN FADSPRRLRV PAVGASPDEI RRAAVEAAEA FLPAPDQSNA PAEEVAAAPT MQFAGDPYYG MDDGMDFGMQ GYLDMAQGML IAPPPLVGPS
201: ATAGDGDDDG EVSLWSY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.