Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- cytosol 1
- plastid 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P00130_001 | |
| GSMUA_Achr8P04400_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | GSMUA_Achr8P04400_001 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | GSMUA_Achr6P00130_001 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P11980_001 | Banana | nucleus | 55.34 | 54.03 |
| GSMUA_Achr11P... | Banana | nucleus | 54.37 | 53.85 |
| GSMUA_Achr3P18160_001 | Banana | nucleus | 17.48 | 52.94 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 80.58 | 52.2 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 53.88 | 51.15 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 53.88 | 51.15 |
| Solyc03g026270.1.1 | Tomato | nucleus | 50.49 | 50.73 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 53.4 | 50.69 |
| KRH35383 | Soybean | nucleus | 50.0 | 50.24 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 52.91 | 50.23 |
| Os02t0677300-02 | Rice | nucleus | 54.37 | 50.0 |
| Os04t0572400-00 | Rice | nucleus | 52.91 | 49.77 |
| KRG91437 | Soybean | nucleus | 50.0 | 49.76 |
| PGSC0003DMT400037122 | Potato | nucleus | 51.94 | 49.31 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 51.46 | 48.62 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 50.49 | 47.71 |
| GSMUA_Achr6P13340_001 | Banana | nucleus | 44.17 | 47.64 |
| Zm00001d017592_P001 | Maize | nucleus | 53.4 | 47.62 |
| Solyc03g026280.2.1 | Tomato | nucleus | 48.54 | 47.62 |
| EES11288 | Sorghum | nucleus | 52.43 | 47.58 |
| Zm00001d002618_P001 | Maize | nucleus | 50.97 | 47.3 |
| Solyc03g124110.1.1 | Tomato | nucleus | 50.0 | 46.82 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 49.03 | 46.54 |
| KRH09144 | Soybean | nucleus | 51.46 | 45.89 |
| AT1G63030.2 | Thale cress | nucleus | 40.29 | 45.86 |
| AT4G25480.1 | Thale cress | nucleus | 48.06 | 45.83 |
| CDY00510 | Canola | nucleus | 48.54 | 45.45 |
| CDY31925 | Canola | nucleus | 48.54 | 45.45 |
| Bra028290.1-P | Field mustard | nucleus | 48.54 | 45.45 |
| Bra019162.1-P | Field mustard | nucleus | 47.09 | 45.33 |
| CDY66018 | Canola | nucleus | 47.09 | 45.33 |
| CDY70584 | Canola | nucleus | 47.09 | 45.33 |
| AT4G25490.1 | Thale cress | nucleus | 46.6 | 45.07 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 46.6 | 45.07 |
| Bra022770.1-P | Field mustard | nucleus | 46.6 | 44.86 |
| CDX84868 | Canola | nucleus | 46.6 | 44.86 |
| CDX92710 | Canola | nucleus | 46.6 | 44.65 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 26.21 | 44.26 |
| CDY52356 | Canola | nucleus | 46.6 | 44.24 |
| CDY65499 | Canola | nucleus | 46.12 | 43.98 |
| AT4G25470.1 | Thale cress | nucleus | 46.12 | 43.98 |
| AT5G51990.1 | Thale cress | nucleus | 47.57 | 43.75 |
| PGSC0003DMT400037120 | Potato | nucleus | 50.0 | 43.64 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 47.57 | 43.56 |
| CDY16016 | Canola | nucleus | 42.23 | 43.28 |
| CDY71145 | Canola | nucleus | 42.23 | 43.07 |
| Bra016763.1-P | Field mustard | nucleus | 42.23 | 43.07 |
| CDY57075 | Canola | nucleus | 43.2 | 43.0 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 49.03 | 42.98 |
| GSMUA_Achr10P... | Banana | nucleus | 47.09 | 42.92 |
| Bra027612.1-P | Field mustard | nucleus | 38.35 | 42.7 |
| CDY49205 | Canola | nucleus | 38.35 | 42.7 |
| CDY52360 | Canola | nucleus | 45.63 | 42.53 |
| Bra026963.1-P | Field mustard | nucleus | 42.23 | 42.44 |
| CDY26574 | Canola | nucleus | 42.23 | 42.44 |
| Bra019777.1-P | Field mustard | nucleus | 42.23 | 42.23 |
| PGSC0003DMT400010876 | Potato | nucleus | 42.23 | 42.03 |
| GSMUA_Achr8P16070_001 | Banana | nucleus, plastid | 39.32 | 41.97 |
| PGSC0003DMT400037121 | Potato | nucleus | 52.43 | 41.86 |
| CDY31270 | Canola | nucleus | 40.78 | 41.58 |
| KRH77483 | Soybean | nucleus | 45.15 | 41.15 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 25.73 | 40.77 |
| Solyc12g056430.1.1 | Tomato | nucleus | 39.81 | 40.39 |
| GSMUA_Achr2P20280_001 | Banana | nucleus | 39.32 | 40.3 |
| AT1G12610.1 | Thale cress | nucleus | 40.29 | 39.71 |
| CDY52358 | Canola | nucleus | 35.92 | 39.15 |
| CDY66013 | Canola | nucleus | 35.44 | 38.22 |
| KRH57258 | Soybean | nucleus | 46.12 | 37.4 |
| KRH03987 | Soybean | nucleus | 46.12 | 37.25 |
| PGSC0003DMT400032622 | Potato | nucleus | 42.72 | 36.97 |
| Solyc08g007830.1.1 | Tomato | nucleus | 38.84 | 34.93 |
| Bra010461.1-P | Field mustard | nucleus | 43.69 | 34.88 |
| Bra010460.1-P | Field mustard | nucleus | 46.12 | 34.55 |
| Solyc08g007820.1.1 | Tomato | nucleus | 40.78 | 34.43 |
| PGSC0003DMT400032621 | Potato | nucleus | 40.29 | 34.02 |
| Bra010463.1-P | Field mustard | nucleus | 36.89 | 33.93 |
| PGSC0003DMT400032623 | Potato | nucleus | 39.81 | 32.93 |
| OQU85641 | Sorghum | nucleus | 52.43 | 32.43 |
| KRH38616 | Soybean | plastid | 50.97 | 32.11 |
| PGSC0003DMT400006896 | Potato | cytosol | 18.93 | 29.1 |
| PGSC0003DMT400090651 | Potato | nucleus | 42.23 | 26.44 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G05900_001 | EnsemblPlants:GSMUA_Achr7P05900_001 | EnsemblPlants:GSMUA_Achr7T05900_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0TF30 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF8 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002957586 | SEG:seg |
Description
Putative Dehydration-responsive element-binding protein 1D [Source:GMGC_GENE;Acc:GSMUA_Achr7G05900_001]
Coordinates
chr7:+:4373251..4374267
Molecular Weight (calculated)
22559.1 Da
IEP (calculated)
5.839
GRAVY (calculated)
-0.480
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTFYGGDGA AASSGSSSSS PSSGETWLYS TVSQAPPKRP AGRTKFRETR HPVYKGVRRR GAAGRWVCEV REPNKKTRIW LGTFPTAEMA ARAHDVAAMM
101: LRGRSACLNF ADSAWRLRVP PSFSSSRDIA RAAAEAAEAF RPSSDSSGDA ADSYRGGAFD MMNYDDMDLG YCYYSSMAEE LLVEPLLYNW DDVDAGADLP
201: LWSYSI
101: LRGRSACLNF ADSAWRLRVP PSFSSSRDIA RAAAEAAEAF RPSSDSSGDA ADSYRGGAFD MMNYDDMDLG YCYYSSMAEE LLVEPLLYNW DDVDAGADLP
201: LWSYSI
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.