Factsheet for GSMUA_Achr6P13340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P00130_001
GSMUA_Achr8P04400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	GSMUA_Achr8P04400_001	AT3G54610.1	16603259
AT4G25490.1	GSMUA_Achr6P00130_001	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	79.58	67.26
GSMUA_Achr2P20280_001	Banana	nucleus	67.54	64.18
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	63.35	62.69
GSMUA_Achr3P18160_001	Banana	nucleus	18.85	52.94
Os01t0968800-00	Rice	nucleus	59.69	52.05
Solyc03g026270.1.1	Tomato	nucleus	54.45	50.73
PGSC0003DMT400037122	Potato	nucleus	56.02	49.31
Solyc03g026280.2.1	Tomato	nucleus	52.36	47.62
GSMUA_Achr11P...	Banana	nucleus	51.83	47.6
PGSC0003DMT400037119	Potato	mitochondrion	29.84	46.72
GSMUA_Achr8P11980_001	Banana	nucleus	51.31	46.45
Solyc03g124110.1.1	Tomato	nucleus	53.4	46.36
Zm00001d041981_P001	Maize	nucleus	59.16	46.12
AT4G25490.1	Thale cress	nucleus	51.31	46.01
EES02136	Sorghum	nucleus	58.12	45.87
Bra027612.1-P	Field mustard	nucleus	43.98	45.41
CDY49205	Canola	nucleus	43.98	45.41
CDX84868	Canola	nucleus	49.74	44.39
Bra022770.1-P	Field mustard	nucleus	49.74	44.39
GSMUA_Achr7P05900_001	Banana	nucleus	47.64	44.17
VIT_16s0100g00380.t01	Wine grape	nucleus	50.26	44.04
KRG91437	Soybean	nucleus	47.64	43.96
CDX92710	Canola	nucleus	49.21	43.72
Bra028290.1-P	Field mustard	nucleus	50.26	43.64
CDY00510	Canola	nucleus	50.26	43.64
AT4G25480.1	Thale cress	nucleus	49.21	43.52
AT4G25470.1	Thale cress	nucleus	49.21	43.52
Bra019162.1-P	Field mustard	nucleus	48.69	43.46
CDY70584	Canola	nucleus	48.69	43.46
KRH35383	Soybean	nucleus	46.6	43.41
CDY66018	Canola	nucleus	48.17	42.99
AT1G63030.2	Thale cress	nucleus	40.31	42.54
CDY52356	Canola	nucleus	48.17	42.4
CDY31925	Canola	nucleus	48.69	42.27
KRH09144	Soybean	nucleus	50.26	41.56
PGSC0003DMT400037118	Potato	mitochondrion	28.27	41.54
PGSC0003DMT400037120	Potato	nucleus	51.31	41.53
AT5G51990.1	Thale cress	nucleus	48.17	41.07
CDY16016	Canola	nucleus	42.93	40.8
CDY65499	Canola	nucleus	46.07	40.74
CDY52360	Canola	nucleus	47.12	40.72
Bra016763.1-P	Field mustard	nucleus	42.93	40.59
CDY71145	Canola	nucleus	42.93	40.59
PGSC0003DMT400037121	Potato	nucleus	54.45	40.31
CDY57075	Canola	nucleus	43.46	40.1
Bra026963.1-P	Field mustard	nucleus	42.93	40.0
CDY26574	Canola	nucleus	42.93	40.0
Bra019777.1-P	Field mustard	nucleus	42.93	39.81
CDY31270	Canola	nucleus	41.88	39.6
VIT_02s0025g04460.t01	Wine grape	nucleus	48.69	39.57
KRH77483	Soybean	nucleus	45.55	38.5
AT1G12610.1	Thale cress	nucleus	41.88	38.28
PGSC0003DMT400010876	Potato	nucleus	41.36	38.16
Solyc12g056430.1.1	Tomato	nucleus	39.79	37.44
Solyc08g007820.1.1	Tomato	nucleus	47.64	37.3
CDY66013	Canola	nucleus	37.17	37.17
CDY52358	Canola	nucleus	36.65	37.04
PGSC0003DMT400032622	Potato	nucleus	46.07	36.97
PGSC0003DMT400032621	Potato	nucleus	46.6	36.48
Bra010461.1-P	Field mustard	nucleus	48.17	35.66
KRH57258	Soybean	nucleus	47.12	35.43
KRH03987	Soybean	nucleus	47.12	35.29
Solyc08g007830.1.1	Tomato	nucleus	40.84	34.06
Bra010460.1-P	Field mustard	nucleus	47.12	32.73
Bra010463.1-P	Field mustard	nucleus	37.7	32.14
PGSC0003DMT400032623	Potato	nucleus	41.88	32.13
PGSC0003DMT400006896	Potato	cytosol	21.99	31.34
PGSC0003DMT400090651	Potato	nucleus	50.79	29.48
KRH38616	Soybean	plastid	49.74	29.05
GSMUA_Achr4P19660_001	Banana	mitochondrion, nucleus	46.07	27.67

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G13340_001	EnsemblPlants:GSMUA_Achr6P13340_001	EnsemblPlants:GSMUA_Achr6T13340_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0T6N2	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002950D9E	SEG:seg

Description

Dehydration-responsive element-binding protein 1F [Source:GMGC_GENE;Acc:GSMUA_Achr6G13340_001]

Coordinates

chr6:+:8903713..8904396

Molecular Weight (calculated)

21118.8 Da

IEP (calculated)

6.950

GRAVY (calculated)

-0.488

Length

191 amino acids

Sequence
(BLAST)

001: MDFEDSSSSS YSCSSSSSGL STAWAPGQSP KRKAGRKKFR ETRHPVYHGV RERNGGKWVS EVREPRKKSR IWLGTFRTPE MAARAHDVAV IALRGASASL
101: NFPDSAWALP RAESAAAEDV RRAAVEAAEM FGPGLPVTPP AVFVDEEALF NMPELLEDMA RGLLVTPPAM QKEFDWDRVA DCHTDLRLWA D

Best Arabidopsis Sequence Match ( AT4G25490.1 )
(BLAST)

001: MNSFSAFSEM FGSDYEPQGG DYCPTLATSC PKKPAGRKKF RETRHPIYRG VRQRNSGKWV SEVREPNKKT RIWLGTFQTA EMAARAHDVA ALALRGRSAC
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY

Arabidopsis Description

DREB1BDRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.