Factsheet for GSMUA_Achr2P20280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P00130_001
GSMUA_Achr8P04400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	GSMUA_Achr8P04400_001	AT3G54610.1	16603259
AT4G25490.1	GSMUA_Achr6P00130_001	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13340_001	Banana	nucleus	64.18	67.54
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	62.19	64.77
GSMUA_Achr10P...	Banana	nucleus	69.65	61.95
Os01t0968800-00	Rice	nucleus	55.22	50.68
GSMUA_Achr3P18160_001	Banana	nucleus	15.92	47.06
Solyc03g026270.1.1	Tomato	nucleus	46.27	45.37
Solyc03g026280.2.1	Tomato	nucleus	47.26	45.24
Zm00001d041981_P001	Maize	nucleus	54.23	44.49
PGSC0003DMT400037122	Potato	nucleus	47.26	43.78
GSMUA_Achr11P...	Banana	nucleus	45.27	43.75
EES02136	Sorghum	nucleus	52.24	43.39
Solyc03g124110.1.1	Tomato	nucleus	46.77	42.73
GSMUA_Achr8P11980_001	Banana	nucleus	44.28	42.18
Bra028290.1-P	Field mustard	nucleus	45.77	41.82
CDY00510	Canola	nucleus	45.77	41.82
Bra022770.1-P	Field mustard	nucleus	44.28	41.59
CDX84868	Canola	nucleus	43.78	41.12
CDX92710	Canola	nucleus	43.78	40.93
AT4G25490.1	Thale cress	nucleus	43.28	40.85
Bra019162.1-P	Field mustard	nucleus	43.28	40.65
CDY70584	Canola	nucleus	43.28	40.65
CDY66018	Canola	nucleus	43.28	40.65
CDY49205	Canola	nucleus	37.31	40.54
Bra027612.1-P	Field mustard	nucleus	37.31	40.54
AT4G25480.1	Thale cress	nucleus	43.28	40.28
CDY31925	Canola	nucleus	43.78	40.0
PGSC0003DMT400037120	Potato	nucleus	46.27	39.41
GSMUA_Achr7P05900_001	Banana	nucleus	40.3	39.32
CDY52356	Canola	nucleus	42.29	39.17
VIT_16s0100g00380.t01	Wine grape	nucleus	42.29	38.99
AT4G25470.1	Thale cress	nucleus	41.79	38.89
AT5G51990.1	Thale cress	nucleus	43.28	38.84
KRG91437	Soybean	nucleus	39.8	38.65
PGSC0003DMT400037121	Potato	nucleus	49.25	38.37
CDY52360	Canola	nucleus	41.79	38.01
PGSC0003DMT400037119	Potato	mitochondrion	22.89	37.7
CDY57075	Canola	nucleus	38.81	37.68
CDY71145	Canola	nucleus	37.81	37.62
Bra016763.1-P	Field mustard	nucleus	37.81	37.62
AT1G63030.2	Thale cress	nucleus	33.83	37.57
Bra019777.1-P	Field mustard	nucleus	38.31	37.38
CDY16016	Canola	nucleus	37.31	37.31
CDY31270	Canola	nucleus	37.31	37.13
CDY65499	Canola	nucleus	39.8	37.04
Bra026963.1-P	Field mustard	nucleus	37.31	36.59
KRH35383	Soybean	nucleus	37.31	36.59
CDY26574	Canola	nucleus	37.31	36.59
VIT_02s0025g04460.t01	Wine grape	nucleus	42.29	36.17
Solyc12g056430.1.1	Tomato	nucleus	36.32	35.96
PGSC0003DMT400010876	Potato	nucleus	36.82	35.75
KRH09144	Soybean	nucleus	40.3	35.06
KRH77483	Soybean	nucleus	39.3	34.96
PGSC0003DMT400037118	Potato	mitochondrion	22.39	34.62
AT1G12610.1	Thale cress	nucleus	35.32	33.97
PGSC0003DMT400032622	Potato	nucleus	39.8	33.61
Solyc08g007820.1.1	Tomato	nucleus	40.8	33.61
KRH57258	Soybean	nucleus	42.29	33.46
KRH03987	Soybean	nucleus	41.79	32.94
PGSC0003DMT400032621	Potato	nucleus	39.8	32.79
Solyc08g007830.1.1	Tomato	nucleus	37.31	32.75
Bra010461.1-P	Field mustard	nucleus	41.79	32.56
CDY66013	Canola	nucleus	30.85	32.46
CDY52358	Canola	nucleus	29.85	31.75
Bra010460.1-P	Field mustard	nucleus	41.79	30.55
PGSC0003DMT400006896	Potato	cytosol	19.9	29.85
PGSC0003DMT400032623	Potato	nucleus	36.82	29.72
Bra010463.1-P	Field mustard	nucleus	31.84	28.57
KRH38616	Soybean	plastid	42.29	25.99
PGSC0003DMT400090651	Potato	nucleus	40.3	24.62
GSMUA_Achr4P19660_001	Banana	mitochondrion, nucleus	38.81	24.53

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G20280_001	EnsemblPlants:GSMUA_Achr2P20280_001	EnsemblPlants:GSMUA_Achr2T20280_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0S9L9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002957C83	SEG:seg

Description

AP2/ERF domain-containing transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr2G20280_001]

Coordinates

chr2:+:20151892..20152578

Molecular Weight (calculated)

22085.6 Da

IEP (calculated)

4.631

GRAVY (calculated)

-0.617

Length

201 amino acids

Sequence
(BLAST)

001: MEFEESSSSS SPPSSSSYSC CSSTSTASGT PITSGKRKAG RKKFRETRHP VYHGVRERNG GRWVCEVREP RKKSRIWLGT FGEPEMAALA HDAAAITLRG
101: ESALLNFPDL AGTLPRARSP APEDVRRAAT EAENTATEDA AAPSAAVFVD EDELFNMPEL IEDMARGMLL TPPALQRRGF DWDIAVEEEQ EIDLSPLWND
201: E

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.