Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013265_P003 | |
| Zm00001d014175_P004 | |
| Zm00001d034033_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Zm00001d014175_P004 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Zm00001d013265_P003 | AT4G16420.1 | 16603259 |
| AT4G25490.1 | Zm00001d034033_P002 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02136 | Sorghum | nucleus | 82.45 | 83.47 |
| Os01t0968800-00 | Rice | nucleus | 65.71 | 73.52 |
| GSMUA_Achr6P13340_001 | Banana | nucleus | 46.12 | 59.16 |
| GSMUA_Achr8P16070_001 | Banana | nucleus, plastid | 44.49 | 56.48 |
| GSMUA_Achr2P20280_001 | Banana | nucleus | 44.49 | 54.23 |
| GSMUA_Achr10P... | Banana | nucleus | 48.98 | 53.1 |
| Solyc03g026270.1.1 | Tomato | nucleus | 39.59 | 47.32 |
| Solyc03g026280.2.1 | Tomato | nucleus | 40.0 | 46.67 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 22.86 | 45.9 |
| PGSC0003DMT400037122 | Potato | nucleus | 40.41 | 45.62 |
| Bra016763.1-P | Field mustard | nucleus | 35.92 | 43.56 |
| CDY71145 | Canola | nucleus | 35.92 | 43.56 |
| CDY49205 | Canola | nucleus | 32.65 | 43.24 |
| Bra027612.1-P | Field mustard | nucleus | 32.65 | 43.24 |
| AT1G63030.2 | Thale cress | nucleus | 31.84 | 43.09 |
| CDY57075 | Canola | nucleus | 36.33 | 43.0 |
| CDX84868 | Canola | nucleus | 37.55 | 42.99 |
| Bra022770.1-P | Field mustard | nucleus | 37.55 | 42.99 |
| CDY66018 | Canola | nucleus | 37.55 | 42.99 |
| Zm00001d017592_P001 | Maize | nucleus | 40.41 | 42.86 |
| Zm00001d002618_P001 | Maize | nucleus | 38.78 | 42.79 |
| CDY16016 | Canola | nucleus | 35.1 | 42.79 |
| Solyc03g124110.1.1 | Tomato | nucleus | 38.37 | 42.73 |
| Bra019777.1-P | Field mustard | nucleus | 35.92 | 42.72 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 37.96 | 42.66 |
| CDY31270 | Canola | nucleus | 35.1 | 42.57 |
| Bra019162.1-P | Field mustard | nucleus | 37.14 | 42.52 |
| CDY70584 | Canola | nucleus | 37.14 | 42.52 |
| KRG91437 | Soybean | nucleus | 35.92 | 42.51 |
| CDX92710 | Canola | nucleus | 37.14 | 42.33 |
| Bra026963.1-P | Field mustard | nucleus | 35.1 | 41.95 |
| CDY26574 | Canola | nucleus | 35.1 | 41.95 |
| KRH35383 | Soybean | nucleus | 35.1 | 41.95 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 40.0 | 41.7 |
| CDY52356 | Canola | nucleus | 36.73 | 41.47 |
| CDY00510 | Canola | nucleus | 37.14 | 41.36 |
| Bra028290.1-P | Field mustard | nucleus | 37.14 | 41.36 |
| AT4G25490.1 | Thale cress | nucleus | 35.51 | 40.85 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 21.63 | 40.77 |
| CDY52360 | Canola | nucleus | 36.33 | 40.27 |
| KRH09144 | Soybean | nucleus | 37.96 | 40.26 |
| PGSC0003DMT400037120 | Potato | nucleus | 38.78 | 40.25 |
| AT5G51990.1 | Thale cress | nucleus | 36.73 | 40.18 |
| CDY31925 | Canola | nucleus | 35.92 | 40.0 |
| AT4G25470.1 | Thale cress | nucleus | 35.1 | 39.81 |
| PGSC0003DMT400037121 | Potato | nucleus | 41.63 | 39.53 |
| CDY65499 | Canola | nucleus | 34.69 | 39.35 |
| AT1G12610.1 | Thale cress | nucleus | 33.47 | 39.23 |
| Zm00001d052732_P001 | Maize | plastid | 35.51 | 39.01 |
| PGSC0003DMT400010876 | Potato | nucleus | 32.65 | 38.65 |
| AT4G25480.1 | Thale cress | nucleus | 33.88 | 38.43 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.84 | 38.42 |
| Zm00001d036003_P001 | Maize | nucleus | 36.33 | 38.36 |
| PGSC0003DMT400032622 | Potato | nucleus | 37.14 | 38.24 |
| PGSC0003DMT400006896 | Potato | cytosol | 20.82 | 38.06 |
| Zm00001d006170_P001 | Maize | nucleus | 35.51 | 37.83 |
| KRH77483 | Soybean | nucleus | 34.69 | 37.61 |
| Solyc08g007820.1.1 | Tomato | nucleus | 37.14 | 37.3 |
| Zm00001d021207_P001 | Maize | nucleus | 35.92 | 36.97 |
| PGSC0003DMT400032621 | Potato | nucleus | 36.73 | 36.89 |
| Solyc08g007830.1.1 | Tomato | nucleus | 34.29 | 36.68 |
| Zm00001d021208_P001 | Maize | plastid | 34.29 | 36.36 |
| Zm00001d021205_P001 | Maize | plastid | 36.33 | 36.18 |
| Zm00001d031728_P001 | Maize | nucleus, plastid | 33.47 | 36.12 |
| KRH57258 | Soybean | nucleus | 37.14 | 35.83 |
| KRH03987 | Soybean | nucleus | 36.73 | 35.29 |
| CDY66013 | Canola | nucleus | 26.94 | 34.55 |
| CDY52358 | Canola | nucleus | 26.53 | 34.39 |
| Bra010461.1-P | Field mustard | nucleus | 35.92 | 34.11 |
| Zm00001d006169_P001 | Maize | plastid | 36.73 | 34.09 |
| PGSC0003DMT400032623 | Potato | nucleus | 33.88 | 33.33 |
| Bra010460.1-P | Field mustard | nucleus | 35.92 | 32.0 |
| Bra010463.1-P | Field mustard | nucleus | 27.76 | 30.36 |
| KRH38616 | Soybean | plastid | 37.55 | 28.13 |
| PGSC0003DMT400090651 | Potato | nucleus | 36.33 | 27.05 |
Protein Annotations
| EntrezGene:103650692 | MapMan:15.5.7.2 | Gene3D:3.30.730.10 | UniProt:A0A060D109 | ProteinID:AIB05162.1 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | ProteinID:ONM34229.1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF8 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0001B60697 | EnsemblPlantsGene:Zm00001d041981 |
| EnsemblPlants:Zm00001d041981_P001 | EnsemblPlants:Zm00001d041981_T001 | SEG:seg | : | : | : |
Description
AP2-EREBP-transcription factor 141Dehydration-responsive element-binding protein 1B
Coordinates
chr3:-:146542859..146543596
Molecular Weight (calculated)
26301.8 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.476
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADDSSYAS SSSFSPPPSP ADHLRLPPKR RAGRKKFRET RHPVYRGVRA RAGGTRWVCE VREPQAQARI WLGTYPTPEM AARAHDVAAI ALRGATAADL
101: NFPDSAHALP RARTAAPDDI RRAAAQAAEL YRPSPSSSSA SGLLLHHGRR TIAAPPPPLS LPPPEASSTC CWTTSTGTRG AGTTPTCCDG FLDEDSIFDM
201: PGLIHDMAWG MLLTPPAMGR GLDWGALDDD DDHSHVDCTL WTLDG
101: NFPDSAHALP RARTAAPDDI RRAAAQAAEL YRPSPSSSSA SGLLLHHGRR TIAAPPPPLS LPPPEASSTC CWTTSTGTRG AGTTPTCCDG FLDEDSIFDM
201: PGLIHDMAWG MLLTPPAMGR GLDWGALDDD DDHSHVDCTL WTLDG
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.