Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013265_P003 | |
| Zm00001d014175_P004 | |
| Zm00001d034033_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Zm00001d014175_P004 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Zm00001d013265_P003 | AT4G16420.1 | 16603259 |
| AT4G25490.1 | Zm00001d034033_P002 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99212 | Sorghum | nucleus, plastid | 87.39 | 86.67 |
| Zm00001d021208_P001 | Maize | plastid | 72.27 | 74.46 |
| Os09t0522200-01 | Rice | nucleus | 71.85 | 71.85 |
| Zm00001d006170_P001 | Maize | nucleus | 68.91 | 71.3 |
| TraesCS5B01G313000.1 | Wheat | nucleus | 64.29 | 64.83 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 64.29 | 64.29 |
| TraesCS5A01G312000.1 | Wheat | plastid | 63.87 | 62.81 |
| Zm00001d052732_P001 | Maize | plastid | 52.94 | 56.5 |
| Zm00001d021205_P001 | Maize | plastid | 54.62 | 52.85 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 65.55 | 51.83 |
| Zm00001d006169_P001 | Maize | plastid | 52.94 | 47.73 |
| Zm00001d031728_P001 | Maize | nucleus, plastid | 44.96 | 47.14 |
| Solyc03g026270.1.1 | Tomato | nucleus | 34.45 | 40.0 |
| Bra022770.1-P | Field mustard | nucleus | 35.71 | 39.72 |
| CDY66018 | Canola | nucleus | 35.71 | 39.72 |
| CDX84868 | Canola | nucleus | 35.71 | 39.72 |
| AT4G25480.1 | Thale cress | nucleus | 35.71 | 39.35 |
| Bra019162.1-P | Field mustard | nucleus | 35.29 | 39.25 |
| CDY70584 | Canola | nucleus | 35.29 | 39.25 |
| PGSC0003DMT400037122 | Potato | nucleus | 35.71 | 39.17 |
| CDX92710 | Canola | nucleus | 35.29 | 39.07 |
| Solyc03g026280.2.1 | Tomato | nucleus | 34.45 | 39.05 |
| CDY52356 | Canola | nucleus | 35.29 | 38.71 |
| AT1G63030.2 | Thale cress | nucleus | 29.41 | 38.67 |
| KRH35383 | Soybean | nucleus | 33.19 | 38.54 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 35.29 | 38.53 |
| AT4G25490.1 | Thale cress | nucleus | 34.45 | 38.5 |
| Zm00001d002618_P001 | Maize | nucleus | 35.71 | 38.29 |
| CDY49205 | Canola | nucleus | 29.41 | 37.84 |
| Bra027612.1-P | Field mustard | nucleus | 29.41 | 37.84 |
| KRG91437 | Soybean | nucleus | 32.77 | 37.68 |
| AT4G25470.1 | Thale cress | nucleus | 34.03 | 37.5 |
| Zm00001d017592_P001 | Maize | nucleus | 36.13 | 37.23 |
| CDY52360 | Canola | nucleus | 34.45 | 37.1 |
| Solyc03g124110.1.1 | Tomato | nucleus | 34.03 | 36.82 |
| PGSC0003DMT400037120 | Potato | nucleus | 36.13 | 36.44 |
| Zm00001d041981_P001 | Maize | nucleus | 36.97 | 35.92 |
| CDY65499 | Canola | nucleus | 32.35 | 35.65 |
| Bra028290.1-P | Field mustard | nucleus | 32.77 | 35.45 |
| CDY00510 | Canola | nucleus | 32.77 | 35.45 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 34.87 | 35.32 |
| PGSC0003DMT400010876 | Potato | nucleus | 30.67 | 35.27 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.07 | 35.25 |
| Bra016763.1-P | Field mustard | nucleus | 29.83 | 35.15 |
| CDY71145 | Canola | nucleus | 29.83 | 35.15 |
| Solyc12g056430.1.1 | Tomato | nucleus | 29.83 | 34.98 |
| CDY31925 | Canola | nucleus | 31.93 | 34.55 |
| CDY31270 | Canola | nucleus | 28.99 | 34.16 |
| Zm00001d036003_P001 | Maize | nucleus | 33.19 | 34.05 |
| AT5G51990.1 | Thale cress | nucleus | 31.93 | 33.93 |
| CDY16016 | Canola | nucleus | 28.57 | 33.83 |
| CDY57075 | Canola | nucleus | 29.41 | 33.82 |
| Bra019777.1-P | Field mustard | nucleus | 28.99 | 33.5 |
| AT1G12610.1 | Thale cress | nucleus | 29.41 | 33.49 |
| KRH09144 | Soybean | nucleus | 32.35 | 33.33 |
| Bra026963.1-P | Field mustard | nucleus | 28.57 | 33.17 |
| CDY26574 | Canola | nucleus | 28.57 | 33.17 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.07 | 33.08 |
| KRH77483 | Soybean | nucleus | 31.09 | 32.74 |
| PGSC0003DMT400037121 | Potato | nucleus | 34.87 | 32.17 |
| CDY52358 | Canola | nucleus | 25.21 | 31.75 |
| Bra010461.1-P | Field mustard | nucleus | 34.03 | 31.4 |
| KRH57258 | Soybean | nucleus | 33.19 | 31.1 |
| CDY66013 | Canola | nucleus | 24.79 | 30.89 |
| PGSC0003DMT400032622 | Potato | nucleus | 30.67 | 30.67 |
| Solyc08g007820.1.1 | Tomato | nucleus | 31.09 | 30.33 |
| KRH03987 | Soybean | nucleus | 32.35 | 30.2 |
| PGSC0003DMT400032621 | Potato | nucleus | 30.67 | 29.92 |
| Bra010460.1-P | Field mustard | nucleus | 34.45 | 29.82 |
| Solyc08g007830.1.1 | Tomato | nucleus | 28.57 | 29.69 |
| PGSC0003DMT400032623 | Potato | nucleus | 28.99 | 27.71 |
| Bra010463.1-P | Field mustard | nucleus | 26.05 | 27.68 |
| PGSC0003DMT400006896 | Potato | cytosol | 14.29 | 25.37 |
| PGSC0003DMT400090651 | Potato | nucleus | 32.77 | 23.71 |
| KRH38616 | Soybean | plastid | 32.35 | 23.55 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A1D6I936 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| ProteinID:ONM56545.1 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF10 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0002219C87 | EnsemblPlantsGene:Zm00001d021207 | EnsemblPlants:Zm00001d021207_P001 | EnsemblPlants:Zm00001d021207_T001 | SEG:seg |
Description
AP2-EREBP-transcription factor 23DRE-binding protein 3
Coordinates
chr7:-:146034693..146035409
Molecular Weight (calculated)
25346.1 Da
IEP (calculated)
4.808
GRAVY (calculated)
-0.353
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPTKKEMSA ESSGSASSWT SASASASTST SPEHQTVWTS PPKRPAGRTK FRETRHPVFR GVRRRGSAGR WVCEVRVPGR RGCRLWLGTF DAAEAAARAH
101: DAAMLAIAGA SACLNFADSA WLLAVPASYA SLADVRRAVA EAVEDFQRRE AAAGDDARSA TSPTPSTSGT DDDAATDGEE SSPATEVSSF QLDVFDNMSW
201: DLYYASMAQG MLMELPSAVP AFGDDGYTNV ADVPLWSY
101: DAAMLAIAGA SACLNFADSA WLLAVPASYA SLADVRRAVA EAVEDFQRRE AAAGDDARSA TSPTPSTSGT DDDAATDGEE SSPATEVSSF QLDVFDNMSW
201: DLYYASMAQG MLMELPSAVP AFGDDGYTNV ADVPLWSY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.