Factsheet for TraesCS5A01G312000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G318900.1	Wheat	nucleus	89.26	90.76
TraesCS5B01G313000.1	Wheat	nucleus	87.6	89.83
HORVU5Hr1G080450.1	Barley	nucleus, plastid	88.43	71.1
Os09t0522200-01	Rice	nucleus	67.77	68.91
EER99212	Sorghum	nucleus, plastid	66.94	67.5
EER99213	Sorghum	nucleus	64.88	66.81
Zm00001d021208_P001	Maize	plastid	61.16	64.07
Zm00001d021207_P001	Maize	nucleus	62.81	63.87
EER99214	Sorghum	plastid	63.64	63.11
TraesCS5A01G311800.1	Wheat	plastid	50.41	50.0
TraesCS6A01G186400.1	Wheat	plastid	48.35	49.37
TraesCS5A01G311700.1	Wheat	nucleus	47.52	49.36
TraesCS6A01G381200.1	Wheat	plastid	49.17	48.57
TraesCS5A01G311900.1	Wheat	nucleus	47.93	48.54
TraesCS6A01G381000.1	Wheat	nucleus	48.76	47.97
TraesCS5A01G311500.1	Wheat	nucleus, plastid	45.87	46.64
TraesCS5A01G311100.1	Wheat	nucleus	44.63	46.15
TraesCS5A01G310200.1	Wheat	nucleus	39.67	45.28
TraesCS5A01G310000.1	Wheat	plastid	44.21	43.32
TraesCS5A01G310700.1	Wheat	nucleus	39.67	43.24
TraesCS5A01G310800.1	Wheat	nucleus	38.43	43.06
TraesCS5A01G311000.1	Wheat	nucleus	37.6	41.36
TraesCS5A01G311600.1	Wheat	nucleus	41.74	41.22
TraesCS5A01G311300.1	Wheat	nucleus	35.95	41.04
TraesCS6A01G256900.1	Wheat	nucleus	36.78	41.01
TraesCS5A01G310900.1	Wheat	mitochondrion	29.75	40.91
CDY49205	Canola	nucleus	29.75	38.92
Bra027612.1-P	Field mustard	nucleus	29.75	38.92
AT1G63030.2	Thale cress	nucleus	28.93	38.67
TraesCS5A01G310600.1	Wheat	nucleus	35.54	38.22
TraesCS7A01G057800.1	Wheat	nucleus, plastid	33.06	38.1
CDX92710	Canola	nucleus	33.47	37.67
TraesCS2A01G399500.1	Wheat	nucleus, plastid	33.88	37.61
KRH35383	Soybean	nucleus	31.82	37.56
CDY70584	Canola	nucleus	33.06	37.38
Bra019162.1-P	Field mustard	nucleus	33.06	37.38
Solyc03g026270.1.1	Tomato	nucleus	31.41	37.07
TraesCS5A01G310400.1	Wheat	nucleus	35.12	36.96
Solyc03g026280.2.1	Tomato	nucleus	31.82	36.67
TraesCS4A01G433300.1	Wheat	nucleus	32.64	36.57
CDX84868	Canola	nucleus	32.23	36.45
Bra022770.1-P	Field mustard	nucleus	32.23	36.45
TraesCS7A01G057700.1	Wheat	nucleus	33.88	36.44
TraesCS4A01G433200.1	Wheat	nucleus	34.3	36.4
VIT_16s0100g00380.t01	Wine grape	nucleus	32.64	36.24
KRG91437	Soybean	nucleus	30.99	36.23
CDY66018	Canola	nucleus	31.82	35.98
PGSC0003DMT400037122	Potato	nucleus	32.23	35.94
TraesCS5A01G310100.1	Wheat	nucleus	39.67	35.69
CDY52356	Canola	nucleus	31.82	35.48
Bra016763.1-P	Field mustard	nucleus	29.34	35.15
CDY71145	Canola	nucleus	29.34	35.15
Solyc03g124110.1.1	Tomato	nucleus	31.82	35.0
CDY16016	Canola	nucleus	28.93	34.83
CDY57075	Canola	nucleus	29.75	34.78
AT4G25490.1	Thale cress	nucleus	30.58	34.74
AT4G25470.1	Thale cress	nucleus	30.99	34.72
Bra028290.1-P	Field mustard	nucleus	31.41	34.55
CDY00510	Canola	nucleus	31.41	34.55
Bra019777.1-P	Field mustard	nucleus	29.34	34.47
AT4G25480.1	Thale cress	nucleus	30.58	34.26
CDY65499	Canola	nucleus	30.58	34.26
TraesCS5A01G310500.1	Wheat	nucleus, plastid	38.84	34.18
CDY31270	Canola	nucleus	28.51	34.16
Bra026963.1-P	Field mustard	nucleus	28.93	34.15
CDY26574	Canola	nucleus	28.93	34.15
Solyc12g056430.1.1	Tomato	nucleus	28.51	33.99
CDY52360	Canola	nucleus	30.99	33.94
PGSC0003DMT400010876	Potato	nucleus	28.93	33.82
CDY31925	Canola	nucleus	30.58	33.64
AT5G51990.1	Thale cress	nucleus	30.99	33.48
VIT_02s0025g04460.t01	Wine grape	nucleus	32.23	33.19
PGSC0003DMT400037120	Potato	nucleus	32.23	33.05
AT1G12610.1	Thale cress	nucleus	28.1	32.54
KRH77483	Soybean	nucleus	30.17	32.3
KRH09144	Soybean	nucleus	30.17	31.6
PGSC0003DMT400037121	Potato	nucleus	33.06	31.01
KRH57258	Soybean	nucleus	32.23	30.71
PGSC0003DMT400032622	Potato	nucleus	29.34	29.83
KRH03987	Soybean	nucleus	31.41	29.8
PGSC0003DMT400037119	Potato	mitochondrion	14.88	29.51
Bra010461.1-P	Field mustard	nucleus	31.41	29.46
Solyc08g007830.1.1	Tomato	nucleus	27.69	29.26
Solyc08g007820.1.1	Tomato	nucleus	29.34	29.1
PGSC0003DMT400032621	Potato	nucleus	28.93	28.69
CDY52358	Canola	nucleus	22.31	28.57
PGSC0003DMT400037118	Potato	mitochondrion	15.29	28.46
CDY66013	Canola	nucleus	22.31	28.27
PGSC0003DMT400032623	Potato	nucleus	28.1	27.31
Bra010460.1-P	Field mustard	nucleus	30.99	27.27
Bra010463.1-P	Field mustard	nucleus	22.73	24.55
PGSC0003DMT400090651	Potato	nucleus	30.99	22.8
PGSC0003DMT400006896	Potato	cytosol	12.4	22.39
KRH38616	Soybean	plastid	29.75	22.02

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF10	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5A01G312000	EnsemblPlants:TraesCS5A01G312000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:-:523615723..523616451

Molecular Weight (calculated)

25937.2 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.383

Length

242 amino acids

Sequence
(BLAST)

001: MCPIKREMSG ESGSPSPCSG ENFCSPSASP ERQQARQAGW TSAPAKRPAG RTKFRETRHP VYRGVRRRGN AGRWVCEVRV PGRRGSRLWL GTFDTAEAAA
101: RANDAVMLML AAGGAACLNF ADSAELLSVP VASSYRSLDE VRHAVVEAVE DLLRREALAE EDALSGTSSS APSPLTDDES SSSPLPEEDS PFEQDVLSEM
201: GWDLYYASLA QAMLMAPPAA AAALGDYGEA HLADVPLWSY QS

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.