Factsheet for TraesCS5A01G311700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G312300.1	Wheat	nucleus	95.28	95.28
TraesCS5D01G318600.1	Wheat	nucleus	93.99	93.99
HORVU5Hr1G080440.2	Barley	nucleus, plastid	91.42	86.94
TraesCS5A01G311500.1	Wheat	nucleus, plastid	73.39	71.85
TraesCS5A01G310000.1	Wheat	plastid	69.53	65.59
TraesCS5A01G311100.1	Wheat	nucleus	63.52	63.25
TraesCS5A01G311800.1	Wheat	plastid	64.38	61.48
TraesCS6A01G186400.1	Wheat	plastid	62.23	61.18
TraesCS6A01G381200.1	Wheat	plastid	63.95	60.82
Os09t0522100-00	Rice	nucleus	63.09	59.76
TraesCS5A01G311600.1	Wheat	nucleus	62.23	59.18
TraesCS6A01G381000.1	Wheat	nucleus	62.23	58.94
TraesCS5A01G311900.1	Wheat	nucleus	59.66	58.16
Zm00001d021205_P001	Maize	plastid	61.37	58.13
TraesCS5A01G310900.1	Wheat	mitochondrion	42.49	56.25
Zm00001d006169_P001	Maize	plastid	60.09	53.03
EER99211	Sorghum	plastid	60.52	51.27
TraesCS5A01G310200.1	Wheat	nucleus	43.78	48.11
TraesCS5A01G312000.1	Wheat	plastid	49.36	47.52
TraesCS5A01G311300.1	Wheat	nucleus	42.06	46.23
AT1G63030.2	Thale cress	nucleus	35.19	45.3
TraesCS5A01G310700.1	Wheat	nucleus	42.06	44.14
TraesCS6A01G256900.1	Wheat	nucleus	40.77	43.78
TraesCS5A01G311000.1	Wheat	nucleus	41.2	43.64
TraesCS5A01G310800.1	Wheat	nucleus	40.34	43.52
TraesCS5A01G310400.1	Wheat	nucleus	42.49	43.04
TraesCS5A01G310600.1	Wheat	nucleus	40.77	42.22
CDY49205	Canola	nucleus	33.48	42.16
Bra027612.1-P	Field mustard	nucleus	33.48	42.16
Bra016763.1-P	Field mustard	nucleus	36.05	41.58
CDY71145	Canola	nucleus	36.05	41.58
Solyc03g026270.1.1	Tomato	nucleus	36.48	41.46
TraesCS2A01G399500.1	Wheat	nucleus, plastid	38.63	41.28
CDY31270	Canola	nucleus	35.19	40.59
CDY57075	Canola	nucleus	36.05	40.58
VIT_16s0100g00380.t01	Wine grape	nucleus	37.77	40.37
CDY16016	Canola	nucleus	34.76	40.3
Bra019777.1-P	Field mustard	nucleus	35.62	40.29
PGSC0003DMT400037122	Potato	nucleus	37.34	40.09
Solyc03g026280.2.1	Tomato	nucleus	36.05	40.0
TraesCS4A01G433300.1	Wheat	nucleus	36.91	39.81
AT1G12610.1	Thale cress	nucleus	35.62	39.71
PGSC0003DMT400010876	Potato	nucleus	35.19	39.61
CDX92710	Canola	nucleus	36.48	39.53
TraesCS7A01G057800.1	Wheat	nucleus, plastid	35.62	39.52
KRH35383	Soybean	nucleus	34.76	39.51
Bra026963.1-P	Field mustard	nucleus	34.76	39.51
CDY26574	Canola	nucleus	34.76	39.51
Solyc12g056430.1.1	Tomato	nucleus	34.33	39.41
CDY70584	Canola	nucleus	36.05	39.25
Bra019162.1-P	Field mustard	nucleus	36.05	39.25
VIT_02s0025g04460.t01	Wine grape	nucleus	39.48	39.15
KRG91437	Soybean	nucleus	34.76	39.13
Solyc03g124110.1.1	Tomato	nucleus	36.48	38.64
TraesCS4A01G433200.1	Wheat	nucleus	37.77	38.6
Bra022770.1-P	Field mustard	nucleus	35.19	38.32
CDX84868	Canola	nucleus	35.19	38.32
CDY52356	Canola	nucleus	35.62	38.25
TraesCS7A01G057700.1	Wheat	nucleus	36.91	38.22
AT4G25490.1	Thale cress	nucleus	34.76	38.03
CDY66018	Canola	nucleus	34.76	37.85
Bra028290.1-P	Field mustard	nucleus	35.62	37.73
CDY00510	Canola	nucleus	35.62	37.73
CDY52360	Canola	nucleus	35.62	37.56
AT4G25480.1	Thale cress	nucleus	34.76	37.5
PGSC0003DMT400032622	Potato	nucleus	38.2	37.4
CDY31925	Canola	nucleus	35.19	37.27
TraesCS5A01G310100.1	Wheat	nucleus	42.92	37.17
AT4G25470.1	Thale cress	nucleus	34.33	37.04
CDY65499	Canola	nucleus	34.33	37.04
Solyc08g007820.1.1	Tomato	nucleus	38.63	36.89
TraesCS5A01G310500.1	Wheat	nucleus, plastid	43.35	36.73
AT5G51990.1	Thale cress	nucleus	35.19	36.61
PGSC0003DMT400032621	Potato	nucleus	38.2	36.48
PGSC0003DMT400037120	Potato	nucleus	36.91	36.44
PGSC0003DMT400037118	Potato	mitochondrion	20.17	36.15
PGSC0003DMT400037119	Potato	mitochondrion	18.45	35.25
KRH77483	Soybean	nucleus	33.91	34.96
KRH03987	Soybean	nucleus	38.2	34.9
KRH57258	Soybean	nucleus	37.34	34.25
Solyc08g007830.1.1	Tomato	nucleus	33.48	34.06
PGSC0003DMT400037121	Potato	nucleus	37.34	33.72
KRH09144	Soybean	nucleus	32.62	32.9
CDY52358	Canola	nucleus	26.61	32.8
Bra010461.1-P	Field mustard	nucleus	36.05	32.56
CDY66013	Canola	nucleus	26.61	32.46
PGSC0003DMT400032623	Potato	nucleus	34.33	32.13
Bra010460.1-P	Field mustard	nucleus	35.62	30.18
Bra010463.1-P	Field mustard	nucleus	27.47	28.57
PGSC0003DMT400006896	Potato	cytosol	15.45	26.87
PGSC0003DMT400090651	Potato	nucleus	34.76	24.62
KRH38616	Soybean	plastid	33.48	23.85

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF5	SMART:SM00380	SUPFAM:SSF54171
EnsemblPlantsGene:TraesCS5A01G311700	EnsemblPlants:TraesCS5A01G311700.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:523450084..523450785

Molecular Weight (calculated)

24449.2 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.328

Length

233 amino acids

Sequence
(BLAST)

001: MDMTGSDQQW SSSSSPSSTS SHPKRPAGRT KFKETRHPVY RGVRRRGNAG RWVCEVRVPG QRGERLWLGT YLTADAAARA HDAAMLGLLG RSAACLNFAD
101: SAWLLAVPPA LADLAAVRRA ALAAVADFQR RHAPNSAATV PADEETSGAS ALSSADNASG SSATSQPWAE GTFEVPSALG SDMFELDLSG EMDLGTYYAD
201: LADGLLLEPP PSLDSGACWD TGDGGADSGL WSY

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.