Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G057800.1 | Wheat | nucleus, plastid | 83.33 | 85.71 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 88.89 | 84.58 |
| TraesCS7A01G057700.1 | Wheat | nucleus | 76.85 | 73.78 |
| TraesCS4A01G433200.1 | Wheat | nucleus | 77.31 | 73.25 |
| Os06t0127100-01 | Rice | nucleus | 62.5 | 63.08 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 56.48 | 59.51 |
| Zm00001d036003_P001 | Maize | nucleus | 61.11 | 56.9 |
| EER87753 | Sorghum | nucleus | 60.19 | 52.21 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 47.22 | 47.0 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 43.06 | 42.66 |
| KRH35383 | Soybean | nucleus | 39.35 | 41.46 |
| AT4G25480.1 | Thale cress | nucleus | 40.74 | 40.74 |
| Solyc03g026270.1.1 | Tomato | nucleus | 38.43 | 40.49 |
| KRG91437 | Soybean | nucleus | 38.43 | 40.1 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 40.28 | 39.91 |
| Bra019162.1-P | Field mustard | nucleus | 39.35 | 39.72 |
| CDY70584 | Canola | nucleus | 39.35 | 39.72 |
| PGSC0003DMT400037122 | Potato | nucleus | 39.81 | 39.63 |
| AT4G25490.1 | Thale cress | nucleus | 38.89 | 39.44 |
| CDY66018 | Canola | nucleus | 38.89 | 39.25 |
| AT1G63030.2 | Thale cress | nucleus | 32.87 | 39.23 |
| CDY31925 | Canola | nucleus | 39.81 | 39.09 |
| CDX92710 | Canola | nucleus | 38.89 | 39.07 |
| Bra022770.1-P | Field mustard | nucleus | 38.43 | 38.78 |
| CDX84868 | Canola | nucleus | 38.43 | 38.78 |
| CDY52356 | Canola | nucleus | 38.89 | 38.71 |
| CDY00510 | Canola | nucleus | 39.35 | 38.64 |
| AT4G25470.1 | Thale cress | nucleus | 38.43 | 38.43 |
| Bra028290.1-P | Field mustard | nucleus | 38.89 | 38.18 |
| AT5G51990.1 | Thale cress | nucleus | 39.35 | 37.95 |
| CDY52360 | Canola | nucleus | 38.43 | 37.56 |
| TraesCS6A01G381200.1 | Wheat | plastid | 42.59 | 37.55 |
| CDY65499 | Canola | nucleus | 37.5 | 37.5 |
| TraesCS5A01G310400.1 | Wheat | nucleus | 39.81 | 37.39 |
| TraesCS5A01G310600.1 | Wheat | nucleus | 38.89 | 37.33 |
| TraesCS5A01G311300.1 | Wheat | nucleus | 36.57 | 37.26 |
| TraesCS5A01G310200.1 | Wheat | nucleus | 36.57 | 37.26 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.11 | 37.14 |
| TraesCS6A01G186400.1 | Wheat | plastid | 40.74 | 37.13 |
| Bra016763.1-P | Field mustard | nucleus | 34.72 | 37.13 |
| CDY71145 | Canola | nucleus | 34.72 | 37.13 |
| TraesCS5A01G311700.1 | Wheat | nucleus | 39.81 | 36.91 |
| TraesCS5A01G311000.1 | Wheat | nucleus | 37.5 | 36.82 |
| CDY16016 | Canola | nucleus | 34.26 | 36.82 |
| CDY57075 | Canola | nucleus | 35.19 | 36.72 |
| TraesCS6A01G381000.1 | Wheat | nucleus | 41.67 | 36.59 |
| Solyc03g124110.1.1 | Tomato | nucleus | 37.04 | 36.36 |
| CDY49205 | Canola | nucleus | 31.02 | 36.22 |
| Bra027612.1-P | Field mustard | nucleus | 31.02 | 36.22 |
| CDY31270 | Canola | nucleus | 33.8 | 36.14 |
| CDY26574 | Canola | nucleus | 34.26 | 36.1 |
| Bra026963.1-P | Field mustard | nucleus | 34.26 | 36.1 |
| Bra019777.1-P | Field mustard | nucleus | 34.26 | 35.92 |
| PGSC0003DMT400010876 | Potato | nucleus | 34.26 | 35.75 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 38.89 | 35.74 |
| TraesCS5A01G310700.1 | Wheat | nucleus | 36.57 | 35.59 |
| TraesCS5A01G311500.1 | Wheat | nucleus, plastid | 38.89 | 35.29 |
| TraesCS5A01G310000.1 | Wheat | plastid | 40.28 | 35.22 |
| AT1G12610.1 | Thale cress | nucleus | 33.8 | 34.93 |
| Solyc12g056430.1.1 | Tomato | nucleus | 32.41 | 34.48 |
| PGSC0003DMT400037120 | Potato | nucleus | 37.5 | 34.32 |
| KRH09144 | Soybean | nucleus | 36.57 | 34.2 |
| KRH77483 | Soybean | nucleus | 35.65 | 34.07 |
| Solyc08g007830.1.1 | Tomato | nucleus | 36.11 | 34.06 |
| PGSC0003DMT400032622 | Potato | nucleus | 37.5 | 34.03 |
| TraesCS5A01G310800.1 | Wheat | nucleus | 33.8 | 33.8 |
| TraesCS5A01G311100.1 | Wheat | nucleus | 36.57 | 33.76 |
| Solyc08g007820.1.1 | Tomato | nucleus | 37.96 | 33.61 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 18.98 | 33.61 |
| TraesCS5A01G311800.1 | Wheat | plastid | 37.04 | 32.79 |
| PGSC0003DMT400032621 | Potato | nucleus | 37.04 | 32.79 |
| TraesCS5A01G312000.1 | Wheat | plastid | 36.57 | 32.64 |
| PGSC0003DMT400037121 | Potato | nucleus | 38.89 | 32.56 |
| CDY52358 | Canola | nucleus | 28.24 | 32.28 |
| PGSC0003DMT400032623 | Potato | nucleus | 37.04 | 32.13 |
| KRH57258 | Soybean | nucleus | 37.04 | 31.5 |
| TraesCS5A01G311600.1 | Wheat | nucleus | 35.65 | 31.43 |
| CDY66013 | Canola | nucleus | 27.78 | 31.41 |
| Bra010461.1-P | Field mustard | nucleus | 37.5 | 31.4 |
| TraesCS5A01G311900.1 | Wheat | nucleus | 34.72 | 31.38 |
| KRH03987 | Soybean | nucleus | 37.04 | 31.37 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 18.52 | 30.77 |
| Bra010460.1-P | Field mustard | nucleus | 38.89 | 30.55 |
| TraesCS5A01G310100.1 | Wheat | nucleus | 37.04 | 29.74 |
| TraesCS5A01G310500.1 | Wheat | nucleus, plastid | 36.57 | 28.73 |
| Bra010463.1-P | Field mustard | nucleus | 29.17 | 28.12 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.74 | 25.37 |
| KRH38616 | Soybean | plastid | 37.96 | 25.08 |
| TraesCS5A01G310900.1 | Wheat | mitochondrion | 20.37 | 25.0 |
| PGSC0003DMT400090651 | Potato | nucleus | 36.57 | 24.01 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF0 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS4A01G433300 | EnsemblPlants:TraesCS4A01G433300.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr4A:-:704153047..704154010
Molecular Weight (calculated)
22847.9 Da
IEP (calculated)
7.900
GRAVY (calculated)
-0.252
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQCGVGLYG VADRIGYATV ASAPPKRPAG RTKFRETRHP VYRGVRRRGA AGRWVCEVRQ PSKKSRIWLG TFASPEAAAR AHDVAALALR GREACLNFAD
101: SAALLAVDPS TLRTPQDIRA AAMALARAAC PKDATNSSVS VAAAPAPTTM LMMQEAAAAP HDSLAMYGGL ADLDQHSHYY YDGMSGCGGD WQSISHMDGA
201: DEDGGYGAGD VALWSY
101: SAALLAVDPS TLRTPQDIRA AAMALARAAC PKDATNSSVS VAAAPAPTTM LMMQEAAAAP HDSLAMYGGL ADLDQHSHYY YDGMSGCGGD WQSISHMDGA
201: DEDGGYGAGD VALWSY
001: MNSFSAFSEM FGSDYEPQGG DYCPTLATSC PKKPAGRKKF RETRHPIYRG VRQRNSGKWV SEVREPNKKT RIWLGTFQTA EMAARAHDVA ALALRGRSAC
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY
Arabidopsis Description
DREB1BDRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.